doc work

docs/_source/installation.rst

@@ -49,12 +49,12 @@ In this example, we are using the Linux user “ewsmanager” and group “ews
 
         mkdir -p .\code regions\EastAfrica\workspace regions\SouthAsia\workspace regions\EastAfrica\resources regions\SouthAsia\resources met_inputs\metofficeupload\upload\Ethiopia\toMO\  met_inputs\metofficeupload\upload\Ethiopia\fromMO\daily_name\ web_data\Ethiopia met_inputs\metofficeupload\upload\SouthAsia\toMO\ met_inputs\metofficeupload\upload\SouthAsia\fromMO\daily_name\ web_data\SouthAsia .\logs .\envs\credentials
 
-:download:`Download .batch file <../_static/assets/windows_create_dirs.batch>`
-:download:`Download .sh file    <../_static/assets/linux_create_dirs.sh>`
+:download:`Download .cmd file <../_static/assets/windows_create_dirs.cmd>`
+:download:`Download .sh file <../_static/assets/linux_create_dirs.sh>`
 
 chmod -R g+sw <install_location>
 
-(make all files written here default to the current user group, and group-writable
+make all files written here default to the current user group, and group-writable. This is not necessary if you are depoying in a single-user environment, such as a personal computer
 
 2: Clone code
 -------------
@@ -86,6 +86,10 @@ or generate this string in bash:
      printf "%s" "git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/${repo}.git ${folder};"
    done
 
+:download:`Download .cmd file <../_static/assets/windows_clone_git.batch>`
+:download:`Download .sh file <../_static/assets/linux_clone_git.sh>`
+
+
 3: Copy the Resources needed for the various chart areas:
 ---------------------------------------------------------
 .. admonition:: Configuration files from Cambridge required

docs/_static/assets/linux_clone_git.sh

+#!/bin/bash
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-coordinator.git coordinator;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-environmental-suitability.git environmental_suitability;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-advisory-builder.git advisory_builder;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-plotting.git plotting;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-epidemiology.git epimodel;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-source-calculation.git source_gen;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-coordinator.git coordinator;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-job-flagging.git flagdir;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-met-processing.git met_extractor_v2;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-postprocessing.git post_processing;
\ No newline at end of file

docs/_static/assets/windows_clone_git.batch

+@ECHO OFF
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-coordinator.git coordinator;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-environmental-suitability.git environmental_suitability;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-advisory-builder.git advisory_builder;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-plotting.git plotting;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-epidemiology.git epimodel;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-source-calculation.git source_gen;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-coordinator.git coordinator;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-job-flagging.git flagdir;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-met-processing.git met_extractor_v2;
+git clone git@gitlab.developers.cam.ac.uk:gilligan-epid/wheat-rusts/ews-postprocessing.git post_processing;
\ No newline at end of file

docs/_static/assets/windows_create_dirs.batch

-this is a batch file
\ No newline at end of file

docs/_static/assets/windows_create_dirs.cmd

+@ECHO OFF
+mkdir .\code regions\EastAfrica\workspace regions\SouthAsia\workspace regions\EastAfrica\resources regions\SouthAsia\resources met_inputs\metofficeupload\upload\Ethiopia\toMO\  met_inputs\metofficeupload\upload\Ethiopia\fromMO\daily_name\ web_data\Ethiopia met_inputs\metofficeupload\upload\SouthAsia\toMO\ met_inputs\metofficeupload\upload\SouthAsia\fromMO\daily_name\ web_data\SouthAsia .\logs .\envs\credentials
\ No newline at end of file