FAQ
| This is a
LIVE
service |
Changelog
Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
ews-coordinator
Manage
Activity
Members
Code
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Locked files
Deploy
Releases
Package Registry
Container Registry
Operate
Terraform modules
Analyze
Contributor analytics
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Terms and privacy
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Gilligan Lab for Epidemiology and Modelling
Wheat rusts
ews-coordinator
Commits
7bbb2585
You need to sign in or sign up before continuing.
Commit
7bbb2585
authored
11 months ago
by
L. Bower
Browse files
Options
Downloads
Patches
Plain Diff
adding script to launch and run docker in one command
parent
e99d6192
No related branches found
Branches containing commit
No related tags found
No related merge requests found
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
configs/docker/run/launchAndRunDockerEWS.sh
+99
-0
99 additions, 0 deletions
configs/docker/run/launchAndRunDockerEWS.sh
configs/docker/run/launchDockerRunnerIaas.sh
+2
-1
2 additions, 1 deletion
configs/docker/run/launchDockerRunnerIaas.sh
with
101 additions
and
1 deletion
configs/docker/run/launchAndRunDockerEWS.sh
0 → 100755
+
99
−
0
View file @
7bbb2585
#!/bin/bash
set
-e
upload
=
''
islive
=
''
clearup
=
''
component
=
'not_set'
config
=
'/storage/app/EWS_prod/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json'
# default
rundate
=
$(
date
'+%Y%m%d'
)
# default today
SHORT
=
p:c:s:h
LONG
=
component:,config:,rundate:,noupload::,islive::,clearup::,help
OPTS
=
$(
getopt
-a
--options
$SHORT
--longoptions
$LONG
--
"
$@
"
)
echo
$OPTS
eval set
--
"
$OPTS
"
while
:
do
case
"
$1
"
in
-p
|
--component
)
component
=
"
$2
"
shift
2
;;
-c
|
--config
)
config
=
"
$2
"
shift
2
;;
-s
|
--rundate
)
rundate
=
"
$2
"
shift
2
;;
--noupload
)
upload
=
"--noupload"
shift
2
;
;;
--islive
)
islive
=
"--islive"
shift
2
;
;;
--clearup
)
clearup
=
"--clearup"
shift
2
;
;;
-h
|
--help
)
"This is a launch script, example usage: runDockerEWS.sh -p Deposition -c -c /<path>/config_EastAfrica_fc_live.json -s 20220808"
exit
2
;;
--
)
shift
;
break
;;
*
)
echo
"Unexpected option:
$1
"
;;
esac
done
if
[
"
$component
"
=
"Environment"
]
;
then
component_script
=
"run_Environment_Processor.sh"
elif
[
"
$component
"
=
"Deposition"
]
;
then
component_script
=
"run_Deposition_Processor.sh"
elif
[
"
$component
"
=
"Survey"
]
;
then
component_script
=
"run_Survey_Processor.sh"
elif
[
"
$component
"
=
"Advisory"
]
;
then
component_script
=
"run_Advisory_Processor.sh"
elif
[
"
$component
"
=
"Scraper"
]
;
then
component_script
=
"run_Environment_Processor.sh"
elif
[
"
$component
"
=
"Epidemiology"
]
;
then
component_script
=
"run_Epidemiology_Processor.sh"
elif
[
"
$component
"
=
"MetResample"
]
;
then
component_script
=
"run_MetResample_Processor.sh"
else
printf
"component '%s' not recognised"
"
$component
"
fi
function
run_coordinator
()
{
printf
"component: %s
\n
config: %s
\n
rundate: %s
\n
"
"
$component
"
"
$config
"
"
$rundate
"
printf
"optional args:
\n
%s
\n
"
"
$upload
$islive
$clearup
"
docker container
ls
;
docker run
\
ews_runner
\
-v
"/storage/app/EWS_prod/code:/storage/app/EWS_prod/code"
\
-v
"/storage/app/EWS_prod/regions:/storage/app/EWS_prod/regions"
\
-v
"/storage/app/EWS_prod/envs/credentials:/storage/app/EWS_prod/envs/credentials"
\
-v
"/storage/sftp:/storage/sftp"
\
-v
"/storage/webdata:/storage/moved"
\
-p
"587:587"
\
-w
"/storage/app/EWS_prod/code"
\
/storage/app/EWS_prod/code/coordinator/scripts/
"
$component_script
"
\
-p
"
$component
"
\
-c
"
$config
"
\
-s
"
$rundate
"
\
$upload
\
$islive
\
$clearup
}
run_coordinator
This diff is collapsed.
Click to expand it.
configs/docker/run/launchDockerRunnerIaas.sh
+
2
−
1
View file @
7bbb2585
#!/bin/bash
set
-e
docker run
-it
-v
"/storage/app/EWS_prod/code:/storage/app/EWS_prod/code"
\
docker run
-it
\
-v
"/storage/app/EWS_prod/code:/storage/app/EWS_prod/code"
\
-v
"/storage/app/EWS_prod/regions:/storage/app/EWS_prod/regions"
\
-v
"/storage/app/EWS_prod/envs/credentials:/storage/app/EWS_prod/envs/credentials"
\
-v
"/storage/sftp:/storage/sftp"
\
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment