updating epi test

tests/integration/test_epi.py

+import copy
+import os
+import unittest
+
+from integration.integration_test_utils import IntegrationTestUtils
+
+
+class TestEpi(unittest.TestCase):
+
+    TEST_OUT_PATH: str = "not_set"
+    TEST_START_DATE: str = '20221001'
+    TEST_JOB_DIR: str = "SUMMARY_" + TEST_START_DATE
+
+    @classmethod
+    def setUpClass(cls) -> None:
+        TestEpi.write_temp_run_config_files()
+        TestEpi.unpack_dependencies()
+        TestEpi.run_advisory_pipeline()
+
+
+    @staticmethod
+    def write_temp_run_config_files():
+        nowstring: str = IntegrationTestUtils.get_now_string()
+        prefix: str = "temp_epi_" + nowstring
+        # prefix: str = ""
+
+        default_config = IntegrationTestUtils.DEFAULT_CONFIG_FILE_PATH
+        default_config_dict: dict = IntegrationTestUtils.load_json_file(default_config)
+        run_dict: dict = copy.deepcopy(default_config_dict)
+        TestEpi.TEST_OUT_PATH = run_dict['WorkspacePathout'] + prefix + os.sep
+        run_dict['WorkspacePathout'] = TestEpi.TEST_OUT_PATH
+        run_dict['WorkspacePath'] = TestEpi.TEST_OUT_PATH
+        run_dict['ServerName'] = ''  # nothing, as local machine
+
+        IntegrationTestUtils.write_json_file(run_dict, IntegrationTestUtils.TEMP_CONFIG_FILE_PATH)
+
+
+    @staticmethod
+    def unpack_dependencies():
+        IntegrationTestUtils.unpack_zip(IntegrationTestUtils.EXAMPLE_SURVEY_FILE_PATH, TestEpi.TEST_OUT_PATH)
+        IntegrationTestUtils.unpack_zip(IntegrationTestUtils.EXAMPLE_DEPO_FILE_PATH, TestEpi.TEST_OUT_PATH)
+        IntegrationTestUtils.unpack_zip(IntegrationTestUtils.EXAMPLE_ENV_SUIT_FILE_PATH, TestEpi.TEST_OUT_PATH)
+
+
+    @staticmethod
+    def run_advisory_pipeline():
+        component = 'Epidemiology'
+        IntegrationTestUtils.run_pipeline(component, TestEpi.TEST_START_DATE)
+
+
+    def test_standard_run_input_status_success(self):
+        status_file_path = os.path.join(TestEpi.TEST_OUT_PATH, TestEpi.TEST_JOB_DIR, "STATUS_SUCCESS")
+        success_file_exists: bool = os.path.isfile(status_file_path)
+        self.assertTrue(success_file_exists)
+
+    def test_standard_run_input_all_docs_produced(self):
+
+        east_africa_image_path = os.path.join(TestEpi.TEST_OUT_PATH, TestEpi.TEST_JOB_DIR,
+                                              "tight-layout",
+                                              "wheat_rust_advisory_template_EastAfrica_20221001.docx")
+        ethiopia_image_path = os.path.join(TestEpi.TEST_OUT_PATH, TestEpi.TEST_JOB_DIR,
+                                           "tight-layout",
+                                           "wheat_rust_advisory_template_Ethiopia_20221001.docx")
+
+        ea_file_exists: bool = os.path.isfile(east_africa_image_path)
+        eth_file_exists: bool = os.path.isfile(ethiopia_image_path)
+        self.assertTrue(ea_file_exists)
+        self.assertTrue(eth_file_exists)
+
+
+if __name__ == '__main__':
+    unittest.main()