adding some new docker config/images for running on IaaS

configs/docker/build/Dockerfile

@@ -38,6 +38,3 @@ RUN conda env create --file conda-env-py3EWS-withbuilds.yml --prefix /storage/ap
 
 #tidy
 RUN rm -v ~/miniconda.sh conda-env-py3EWS-withbuilds.yml;
-
-FROM base_image as runner
-CMD ["echo", "hello world"]
\ No newline at end of file

configs/docker/build/RunnerDockerfile

-FROM ews_coordinator:latest
-
-ENTRYPOINT ["/storage/app/EWS_prod/code/coordinator/run_Processor.sh"]
-#CMD ["-p" "-c", "--noupload", "-s"]
\ No newline at end of file

configs/docker/build/installRPackages.txt

-install.packages("devtools", repos='http://cran.us.r-project.org')
-install.packages("dplyr", repos='http://cran.us.r-project.org')
-require(devtools)
-install_version("readr", version="1.1.1", repos="http://cran.us.r-project.org")
-install_version("rprojroot", version="1.3-2", repos="http://cran.us.r-project.org")
-install_version("raster", version="2.6-7", repos="http://cran.us.r-project.org")
-install_version("lubridate", version="1.7.4", repos="http://cran.us.r-project.org")
-install_version("magrittr", version="1.5", repos="http://cran.us.r-project.org")
-install_version("rgdal", version="1.3-3", repos="http://cran.us.r-project.org")
-install_version("tidyr", version="0.8.1", repos="http://cran.us.r-project.org")
-install_version("rgeos", version="0.3-28", repos="http://cran.us.r-project.org")

configs/docker/run/launchDockerRunnerIaas.sh

 #!/bin/bash
 set -e
 
-upload='--noupload' # default
-rundate=$(date '+%Y%m%d') # default today
-
-SHORT=p:,c:,s:,h
-LONG=component:,config:,rundate::,help
-OPTS=$(getopt -a -n weather --options $SHORT --longoptions $LONG -- "$@")
-
-eval set -- "$OPTS"
-
-while :
-do
-  case "$1" in
-    -p | --component )
-      component="$2"
-      shift 2
-      ;;
-    -c | --config )
-      config="$2"
-      shift 2
-      ;;
-    -s | --rundate )
-      rundate="$2"
-      shift 2
-      ;;
-    -h | --help)
-      "This is a weather script"
-      exit 2
-      ;;
-    --)
-      shift;
-      break
-      ;;
-    *)
-      echo "Unexpected option: $1"
-      ;;
-  esac
-done
-
-printf "component: %s\nconfig: %s\nrundate: %s\nupload: %s\n" $component $config $rundate $upload
-
-function run_depo_plotting() {
-  docker run -it -v "/media/scratch/lb584_scratch/projects/ews_aws/ews_3/code:/storage/app/EWS_prod/code" \
-    -v "/media/scratch/lb584_scratch/projects/ews_aws/ews_3/regions:/storage/app/EWS_prod/regions" \
-    -v "/media/scratch/lb584_scratch/projects/ews_aws/ews_3/envs/credentials:/storage/app/EWS_prod/envs/credentials" \
-    -w "/storage/app/EWS_prod/code" \
-    ews_coordinator_runner \
-    -p $component \
-    -c $config \
-    -s $rundate \
-    $upload
-}
-
-run_depo_plotting
+docker run -dt -v "/media/scratch/lb584_scratch/projects/ews_aws/ews_3/code:/storage/app/EWS_prod/code" \
+  -v "/media/scratch/lb584_scratch/projects/ews_aws/ews_3/regions:/storage/app/EWS_prod/regions" \
+  -v "/media/scratch/lb584_scratch/projects/ews_aws/ews_3/envs/credentials:/storage/app/EWS_prod/envs/credentials" \
+  -w "/storage/app/EWS_prod/code" \
+  --name ews_runner \
+  ews_coordinator
+
+echo "launched"

configs/docker/run/runDockerEWS.sh

+#!/bin/bash
+set -e
+
+upload='--noupload' # default
+rundate=$(date '+%Y%m%d') # default today
+
+SHORT=p:,c:,s:,h
+LONG=component:,config:,rundate::,help
+OPTS=$(getopt -a -n weather --options $SHORT --longoptions $LONG -- "$@")
+
+eval set -- "$OPTS"
+
+while :
+do
+  case "$1" in
+    -p | --component )
+      component="$2"
+      shift 2
+      ;;
+    -c | --config )
+      config="$2"
+      shift 2
+      ;;
+    -s | --rundate )
+      rundate="$2"
+      shift 2
+      ;;
+    -h | --help)
+      "This is a weather script"
+      exit 2
+      ;;
+    --)
+      shift;
+      break
+      ;;
+    *)
+      echo "Unexpected option: $1"
+      ;;
+  esac
+done
+
+printf "component: %s\nconfig: %s\nrundate: %s\nupload: %s\n" $component $config $rundate $upload
+
+function run_coordinator() {
+  docker exec -it \
+    ews_runner \
+    /storage/app/EWS_prod/code/coordinator/run_Processor.sh \
+    -p $component \
+    -c $config \
+    -s $rundate \
+    $upload
+}
+
+run_coordinator