modifying gitlab-ci

.gitlab-ci.yml

@@ -161,18 +161,18 @@ epi_fit:
       $OUTPUT_DIR
       2016
       2017
-
-      cp -rv $OUTPUT_DIR/*.csv $OUTPUT_DIR/*.json $OUTPUT_DIR/*.txt $OUTPUT_DIR/parameter_sweep_heatmaps $CI_PROJECT_DIR/fitting_outputs/
       
       python3 $PACKAGES_DIR/epimodel/ews/epi_model/epi_fit/params_metrics_file_compare.py       
       /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/outputs/optimum_parameters_metrics.csv 
       /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/inputs/configs/example_optimum_parameters_metrics.csv 
-      /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/outputs/metric_comparison.txt
-      compare_exit_code=$?
+      /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/outputs/metric_comparison.txt || FAILED=true
       
-      cp -rv $OUTPUT_DIR/metric_results.csv $OUTPUT_DIR/metric_comparison.txt $CI_PROJECT_DIR/fitting_outputs/
+      cp -rv $OUTPUT_DIR/*.csv $OUTPUT_DIR/*.json $OUTPUT_DIR/*.txt $OUTPUT_DIR/parameter_sweep_heatmaps $CI_PROJECT_DIR/fitting_outputs/
       
-      exit $compare_exit_code
+      if [ $FAILED ]
+        then
+            exit 1
+      fi
 
   artifacts:
     when: always