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Commit 5e0ec662 authored by J.W. Smith's avatar J.W. Smith
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feat: Operational configs now refer to Resources/ 

All non-git-tracked files required to run the operational aspects of the
early warning system are now stored in a project specific directory
called Resources/.
This should ease archiving and redeployment.
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configs/config_EastAfrica_an_live.json
+ 35
− 40
View file @ 5e0ec662
......@@ -5,14 +5,15 @@
"StartString" : "?",
"WorkspacePathout" : "/storage/app/EWS/Ethiopia/Workspace_analysis/",
"WorkspacePath" : "/storage/app/EWS/Ethiopia/Workspace/",
"ResourcesPath" : "/storage/app/EWS/Ethiopia/Resources/",
"ServerPath" : "/storage/moved/Ethiopia/analysis/",
"ServerName" : "willow.csx.cam.ac.uk",
"ServerKey" : "/storage/app/EWS/General/EWS-Coordinator/ssh_key_willow",
"ServerKey" : "/storage/app/EWS/Ethiopia/Resources/EWS-Coordinator/ssh_key_willow",
"Survey" : {
"ProcessPreJob" : "process_pre_job_survey",
"ProcessInJob" : "process_in_job_survey",
"ProcessEWSPlotting" : "process_EWS_plotting_survey",
"ServerCredentialsFile" : "/storage/app/EWS/Ethiopia/Workspace/Cred-ODK-EIAR.json",
"ServerCredentialsFile" : "/storage/app/EWS/Ethiopia/Resources/EWS-Coordinator/Cred-ODK-EIAR.json",
"ServerPathExtra" : "/storage/sftp/metofficeupload/upload/Ethiopia/toMO/",
"FormEdits" : {
"wheat_rust_survey_1_0" : {},
......@@ -22,10 +23,10 @@
}
}
},
"SourcesConfigFilename" : "/storage/app/EWS/General/wheat-source-generation/data/config_EastAfrica_mapspam2017.R",
"SourcesConfigFilename" : "/storage/app/EWS/Ethiopia/Resources/wheat-source-generation/config_EastAfrica_mapspam2017.R",
"SourcesRegionName" : "EastAfrica"
},
"Environment" : {
"Environment" : {
"ServerPathTemplate" : "/storage/sftp/metofficeupload/upload/Ethiopia/fromMO/daily_name/",
"InputFileTemplate" : "WR_EnvSuit_Met_Ethiopia_${StartString}_an",
"TimeExpectedAvailable" : "1400",
......@@ -33,7 +34,7 @@
"ProcessInJob" : "process_in_job_env2_0",
"ProcessEWSPlotting" : "process_EWS_plotting_env2_0",
"BIN_PATH" : "/storage/app/EWS/General/EWS-met_extractor/",
"TEMPLATE_PATH": "/storage/app/EWS/General/EWS-met_extractor/configs/",
"TEMPLATE_PATH": "/storage/app/EWS/Ethiopia/Resources/EWS-met_extractor/",
"WORK_PATH": "/storage/app/EWS/Ethiopia/Workspace_analysis/",
"INPUT_PATH": "/storage/app/EWS/Ethiopia/Workspace_analysis/",
"OUTPUT_PATH": "/storage/app/EWS/Ethiopia/Workspace_analysis/",
......@@ -91,7 +92,7 @@
}
}
},
"Deposition" : {
"Deposition" : {
"ServerPathTemplate" : "/storage/sftp/metofficeupload/upload/Ethiopia/fromMO/daily_name/",
"InputFileTemplate" : "WR_NAME_Ethiopia_${StartString}_an",
"DataFileTemplate" : "deposition_srcs_allregions_${StartString}.nc",
......@@ -120,30 +121,30 @@
}
},
"Epidemiology" : {
"DiseaseNames" : ["StemRust","StripeRust","LeafRust"],
"CalculationSpanDays" : [0,5],
"DiseaseNames" : ["StemRust"],
"CalculationSpanDays" : ["20220501",5],
"TimeStep_hours": "3",
"ProcessPreJob" : "process_pre_job_epi",
"ProcessInJob" : "process_in_job_epi",
"ProcessEWSPlotting" : "process_EWS_plotting_epi",
"Host" : {
"MaxFieldsPerCell" : "1",
"HostRaster" : "/storage/app/EWS/Ethiopia/Resources/EWS-EpiModel/wheat_area_frac_MapSPAM2010_EastAfrica.tif"
},
"Deposition" : {
"PathTemplate" : "${WorkspacePathout}DEPOSITION_${StartString}/WR_NAME_Ethiopia_${StartString}_an/",
"PathTemplate" : "${WorkspacePathout}DEPOSITION_${DateString}/WR_NAME_Ethiopia_${DateString}_an/",
"SuccessFileTemplate" : "${WorkspacePathout}DEPOSITION_${StartString}/STATUS_SUCCESS",
"FileListerFunction" : "list_deposition_files_historical",
"FileNameTemplate" : "deposition_srcs_allregions_C1_T${tIndexPlusOneString}_${iTimeString}.txt",
"FileListerFunction" : "list_deposition_files_operational",
"FileNamePrepared" : "?"
},
"Environment" : {
"PathTemplate" : "${WorkspacePathout}ENVIRONMENT_2.0_${StartString}/processed/${SubRegionName}/${DiseaseName}/",
"PathTemplate" : "${WorkspacePathout}ENVIRONMENT_2.0_${DateString}/processed/${RegionName}/${DiseaseName}/",
"SuccessFileTemplate" : "${WorkspacePathout}ENVIRONMENT_2.0_${StartString}/STATUS_SUCCESS",
"FileListerFunction" : "list_env_suit_files_historical",
"FileNameTemplate" : "RIE_value.csv",
"FileListerFunction" : "list_env_suit_files_operational",
"FileNamePrepared" : "?"
},
"Host": {
"MaxFieldsPerCell": "1",
"HostRaster": "/storage/home/jws52/projects/EWS-EpiModel/input_Ethiopia/HOST/wheat_area_frac_MapSPAM2017SSA_Ethiopia.tif"
},
"Epi" : [
{
"model" : "Env",
......@@ -151,7 +152,7 @@
"infectionRasterFileName" : "?",
"description": "env. suitability",
"analysis" : {
"vmin" : 0.0e+0,
"vmin" : 0.0e+0,
"vmax" : 1.5e+1,
"subplot_position" : [0,0],
"cmapString" : "CMRmap_r",
......@@ -159,38 +160,32 @@
"UTMprojection" : 37
}
},{
"model" : "log10Dep",
"modelArguments" : {},
"model" : "ps",
"modelArguments": {
"beta": 4.0e-3,
"gamma": 6.3e-4,
"alpha": 1.0,
"infection": "previous"
},
"infectionRasterFileName" : "?",
"description": "log(spore deposition)",
"analysis" : {
"vmin" : 0.0e+0,
"vmax" : 3.0e+2,
"subplot_position" : [0,1],
"cmapString" : "CMRmap_r",
"bounds" : [32.5,48.0,3.3,15.0],
"UTMprojection" : 37
}
},{
"model" : "log10DepEnv",
"modelArguments" : {},
"infectionRasterFileName" : "?",
"description": "EPI: env.suit $\\times$ log(dep.)",
"description": "SE[beta*log10(alpha*D)+gamma*P]",
"analysis" : {
"vmin" : 0.0e+0,
"vmax" : 1.5e+1,
"subplot_position" : [0,2],
"vmax" : 1,
"subplot_position" : [0,1],
"cmapString" : "CMRmap_r",
"bounds" : [32.5,48.0,3.3,15.0],
"bounds": [32.5,48.0,3.3,15.0],
"UTMprojection" : 37
}
}
],
"EWS-Plotting" : {
"Path" : "/storage/app/EWS/General/EWS-Plotting/",
"RunConfig" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/RUN_CONFIG_ETH_PINE.json",
"PythonScript" : "/storage/app/EWS/General/EWS-Plotting/python/ethiopia/ews_plotting_epi_ethiopia_main.py",
"EpiCase" : "log10DepEnv"
"PythonScript" : "/storage/app/EWS/General/EWS-Plotting/python/chart_areas/east_africa/ews_plotting_epi_east_africa_main.py",
"ChartConfig" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/ews/chart/CHART_CONFIG_EAST_AFRICA_PINE.json",
"RunConfig_seasonsofar" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/ews/epi/RUN_CONFIG_EPI_seasonaccum.json",
"RunConfig_weekahead" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/ews/epi/RUN_CONFIG_EPI_weekahead.json",
"EpiCase" : "ps"
}
}
}
}
\ No newline at end of file
configs/config_EastAfrica_fc_live.json
+ 19
− 19
View file @ 5e0ec662
......@@ -5,6 +5,7 @@
"StartString" : "?",
"WorkspacePathout" : "/storage/app/EWS/Ethiopia/Workspace/",
"WorkspacePath" : "/storage/app/EWS/Ethiopia/Workspace/",
"ResourcesPath" : "/storage/app/EWS/Ethiopia/Resources/",
"ServerPath" : "/storage/moved/Ethiopia/",
"ServerName" : "willow.csx.cam.ac.uk",
"ServerKey" : "/storage/app/EWS/Ethiopia/Resources/EWS-Coordinator/ssh_key_willow",
......@@ -33,7 +34,7 @@
"ProcessInJob" : "process_in_job_env2_0",
"ProcessEWSPlotting" : "process_EWS_plotting_env2_0",
"BIN_PATH" : "/storage/app/EWS/General/EWS-met_extractor/",
"TEMPLATE_PATH": "/storage/app/EWS/General/EWS-met_extractor/configs/",
"TEMPLATE_PATH": "/storage/app/EWS/Ethiopia/Resources/EWS-met_extractor/",
"WORK_PATH": "/storage/app/EWS/Ethiopia/Workspace/",
"INPUT_PATH": "/storage/app/EWS/Ethiopia/Workspace/",
"OUTPUT_PATH": "/storage/app/EWS/Ethiopia/Workspace/",
......@@ -121,14 +122,14 @@
},
"Epidemiology" : {
"DiseaseNames" : ["StemRust"],
"CalculationSpanDays" : ["20210715",5],
"CalculationSpanDays" : ["20220501",5],
"TimeStep_hours": "3",
"ProcessPreJob" : "process_pre_job_epi",
"ProcessInJob" : "process_in_job_epi",
"ProcessEWSPlotting" : "process_EWS_plotting_epi",
"Host" : {
"MaxFieldsPerCell" : "1",
"HostRaster" : "/storage/app/EWS/General/EWS-EpiModel/input_EastAfrica/wheat_area_frac_MapSPAM2010_EastAfrica.tif"
"HostRaster" : "/storage/app/EWS/Ethiopia/Resources/EWS-EpiModel/wheat_area_frac_MapSPAM2010_EastAfrica.tif"
},
"Deposition" : {
"VariableName" : "P_GRAMINIS_DEPOSITION",
......@@ -156,9 +157,8 @@
"vmax" : 1.5e+1,
"subplot_position" : [0,0],
"cmapString" : "CMRmap_r",
"bounds": [32.5,48.0,3.3,15.0],
"bounds" : [32.5,48.0,3.3,15.0],
"UTMprojection" : 37
}
},{
"model" : "ps",
......@@ -177,15 +177,15 @@
"cmapString" : "CMRmap_r",
"bounds": [32.5,48.0,3.3,15.0],
"UTMprojection" : 37
}
}
}
],
"EWS-Plotting" : {
"Path" : "/storage/app/EWS/General/EWS-Plotting/",
"PythonScript" : "/storage/app/EWS/General/EWS-Plotting/python/chart_areas/east_africa/ews_plotting_epi_east_africa_main.py",
"ChartConfig" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/ews/chart/CHART_CONFIG_EAST_AFRICA_PINE.json",
"RunConfig_seasonsofar" : "/storage/home/jws52/projects/EWS-plotting/python/data/json_config/ews/epi/RUN_CONFIG_EPI_seasonaccum.json",
"RunConfig_weekahead" : "/storage/home/jws52/projects/EWS-plotting/python/data/json_config/ews/epi/RUN_CONFIG_EPI_weekahead.json",
"RunConfig_seasonsofar" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/ews/epi/RUN_CONFIG_EPI_seasonaccum.json",
"RunConfig_weekahead" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/ews/epi/RUN_CONFIG_EPI_weekahead.json",
"EpiCase" : "ps"
}
},
......@@ -233,24 +233,24 @@
}
},
"Surveys" : {
"variety_names_tidy_fn" : "/storage/app/EWS/General/EWS-advisory-builder/configs/config_EastAfrica_variety_names_tidy.json",
"variety_names_tidy_fn" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/config_EastAfrica_variety_names_tidy.json",
"CountryColumnName" : "surveyor_infromation-country",
"EastAfrica" : {
"ShapeFilenameAdmin0" : "/storage/app/EWS/Ethiopia/Documents/shapefiles/EthKen_admin0.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/Ethiopia/Documents/shapefiles/EthKen_admin1.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/Ethiopia/Documents/shapefiles/EthKen_admin2.shp"
"ShapeFilenameAdmin0" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/EthKen_admin0.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/EthKen_admin1.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/EthKen_admin2.shp"
},
"Ethiopia" : {
"ShapeFilenameAdmin0" : "/storage/app/EWS/Ethiopia/Documents/shapefiles/admin-boundaries/Ethiopia_All/Eth_Region_2013.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/Ethiopia/Documents/shapefiles/admin-boundaries/Ethiopia_All/Eth_ADM1_EN.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/Ethiopia/Documents/shapefiles/admin-boundaries/Ethiopia_All/Eth_Woreda_2013.shp"
"ShapeFilenameAdmin0" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/Eth_Region_2013.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/Eth_ADM1_EN.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/Eth_Woreda_2013.shp"
},
"Kenya" : {
"ShapeFilenameAdmin0" : "/storage/app/EWS/Ethiopia/Documents/shapefiles/ken_adm_iebc_20191031_shp/ken_admbnda_adm0_iebc_20191031.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/Ethiopia/Documents/shapefiles/ken_adm_iebc_20191031_shp/ken_admbnda_adm1_iebc_20191031.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/Ethiopia/Documents/shapefiles/ken_adm_iebc_20191031_shp/ken_admbnda_adm2_iebc_20191031.shp"
"ShapeFilenameAdmin0" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/ken_admbnda_adm0_iebc_20191031.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/ken_admbnda_adm1_iebc_20191031.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/ken_admbnda_adm2_iebc_20191031.shp"
}
},
"logos" : "/storage/app/EWS/Ethiopia/Documents/logos_Ethiopia_plotting.png"
"logos" : "/storage/app/EWS/Ethiopia/Resources/EWS-advisory-builder/logos_Ethiopia_plotting.png"
}
}
\ No newline at end of file
configs/config_SouthAsia_an_live.json
+ 16
− 15
View file @ 5e0ec662
......@@ -5,14 +5,15 @@
"StartString" : "?",
"WorkspacePathout" : "/storage/app/EWS/SouthAsia/Workspace_analysis/",
"WorkspacePath" : "/storage/app/EWS/SouthAsia/Workspace/",
"ResourcesPath" : "/storage/app/EWS/SouthAsia/Resources/",
"ServerPath" : "/storage/moved/SouthAsia/analysis/",
"ServerName" : "willow.csx.cam.ac.uk",
"ServerKey" : "/storage/app/EWS/General/EWS-Coordinator/ssh_key_willow",
"ServerKey" : "/storage/app/EWS/SouthAsia/Resources/EWS-Coordinator/ssh_key_willow",
"Survey" : {
"ProcessPreJob" : "process_pre_job_survey",
"ProcessInJob" : "process_in_job_survey",
"ProcessEWSPlotting" : "process_EWS_plotting_survey",
"ServerCredentialsFile" : "/storage/app/EWS/SouthAsia/Workspace/Cred-ODK-CIMMYT-Bangladesh.json",
"ServerCredentialsFile" : "/storage/app/EWS/SouthAsia/Resources/EWS-Coordinator/Cred-ODK-CIMMYT-Bangladesh.json",
"ServerPathExtra" : "/storage/sftp/metofficeupload/upload/SouthAsia/toMO/",
"FormEdits" : {
"wheat_rust_blast_survey_1_1" : {},
......@@ -21,10 +22,10 @@
"subscriberid" : ""}
}
},
"SourcesConfigFilename" : "/storage/app/EWS/General/wheat-source-generation/data/config_SouthAsia_mapspam2005.R",
"SourcesConfigFilename" : "/storage/app/EWS/SouthAsia/Resources/wheat-source-generation/config_SouthAsia_mapspam2005.R",
"SourcesRegionName" : "SouthAsia"
},
"Environment" : {
"Environment" : {
"ServerPathTemplate" : "/storage/sftp/metofficeupload/upload/SouthAsia/fromMO/daily_name/",
"InputFileTemplate" : "WR_EnvSuit_Met_SouthAsia_${StartString}_an",
"TimeExpectedAvailable" : "1400",
......@@ -32,7 +33,7 @@
"ProcessInJob" : "process_in_job_env2_0",
"ProcessEWSPlotting" : "process_EWS_plotting_env2_0",
"BIN_PATH" : "/storage/app/EWS/General/EWS-met_extractor/",
"TEMPLATE_PATH": "/storage/app/EWS/General/EWS-met_extractor/configs/",
"TEMPLATE_PATH": "/storage/app/EWS/SouthAsia/Resources/EWS-met_extractor/",
"WORK_PATH": "/storage/app/EWS/SouthAsia/Workspace_analysis/",
"INPUT_PATH": "/storage/app/EWS/SouthAsia/Workspace_analysis/",
"OUTPUT_PATH": "/storage/app/EWS/SouthAsia/Workspace_analysis/",
......@@ -76,7 +77,7 @@
"Path" : "/storage/app/EWS/General/EWS-Plotting/",
"SysConfig" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/sys/SYS_CONFIG_PINE.json",
"RunConfig" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/ews/env_suit/RUN_CONFIG_ENV.json",
"SouthAsia" : {
"SouthAsia" : {
"ChartConfig" : "/storage/app/EWS/General/EWS-Plotting/python/data/json_config/ews/chart/CHART_CONFIG_ASIA_PINE.json",
"PythonScript" : "/storage/app/EWS/General/EWS-Plotting/python/chart_areas/south_asia/ews_plotting_env_asia_main.py"
},
......@@ -90,7 +91,7 @@
}
}
},
"Deposition" : {
"Deposition" : {
"ServerPathTemplate" : "/storage/sftp/metofficeupload/upload/SouthAsia/fromMO/daily_name/",
"InputFileTemplate" : "WR_NAME_SouthAsia_${StartString}_fc",
"DataFileTemplate" : "deposition_srcs_allregions_${StartString}.nc",
......@@ -124,24 +125,24 @@
"TimeStep_hours": "3",
"ProcessPreJob" : "process_pre_job_epi",
"ProcessInJob" : "process_in_job_epi",
"ProcessEWSPlotting" : "process_EWS_plotting_epi",
"ProcessEWSPlotting" : "do_nothing",
"Deposition" : {
"PathTemplate" : "${WorkspacePathout}DEPOSITION_${StartString}/WR_NAME_SouthAsia_${StartString}_an/",
"SuccessFileTemplate" : "${WorkspacePathout}DEPOSITION_${StartString}/STATUS_SUCCESS",
"PathTemplate" : "${WorkspacePathout}DEPOSITION_${DateString}/WR_NAME_SouthAsia_${StartString}_an/",
"SuccessFileTemplate" : "${WorkspacePathout}DEPOSITION_${dateString}/STATUS_SUCCESS",
"FileNameTemplate" : "deposition_srcs_allregions_C1_T${tIndexPlusOneString}_${iTimeString}.txt",
"FileListerFunction" : "list_deposition_files_operational",
"FileNamePrepared" : "?"
},
"Environment" : {
"PathTemplate" : "${WorkspacePathout}ENVIRONMENT_2.0_${StartString}/processed/${SubRegionName}/${DiseaseName}/",
"SuccessFileTemplate" : "${WorkspacePathout}ENVIRONMENT_2.0_${StartString}/STATUS_SUCCESS",
"PathTemplate" : "${WorkspacePathout}ENVIRONMENT_2.0_${DateString}/processed/${SubRegionName}/${DiseaseName}/",
"SuccessFileTemplate" : "${WorkspacePathout}ENVIRONMENT_2.0_${DateString}/STATUS_SUCCESS",
"FileNameTemplate" : "RIE_value.csv",
"FileListerFunction" : "list_env_suit_files_operational",
"FileNamePrepared" : "?"
},
"Host": {
"MaxFieldsPerCell": "1",
"HostRaster": "/storage/home/jws52/projects/EWS-EpiModel/input_SouthAsia/wheat_area_frac_MapSPAM2005_SouthAsia.tif"
"HostRaster": "/storage/app/EWS/SouthAsia/Resources/EWS-EpiModel/wheat_area_frac_MapSPAM2005_SouthAsia.tif"
},
"Epi" : [
{
......@@ -150,7 +151,7 @@
"infectionRasterFileName" : "?",
"description": "env. suitability",
"analysis" : {
"vmin" : 0.0e+0,
"vmin" : 0.0e+0,
"vmax" : 1.5e+1,
"subplot_position" : [0,0],
"cmapString" : "CMRmap_r",
......@@ -163,7 +164,7 @@
"infectionRasterFileName" : "?",
"description": "log(spore deposition)",
"analysis" : {
"vmin" : 0.0e+0,
"vmin" : 0.0e+0,
"vmax" : 3.0e+2,
"subplot_position" : [0,1],
"cmapString" : "CMRmap_r",
......
configs/config_SouthAsia_fc_live.json
+ 18
− 17
View file @ 5e0ec662
......@@ -5,6 +5,7 @@
"StartString" : "?",
"WorkspacePathout" : "/storage/app/EWS/SouthAsia/Workspace/",
"WorkspacePath" : "/storage/app/EWS/SouthAsia/Workspace/",
"ResourcesPath" : "/storage/app/EWS/SouthAsia/Resources/",
"ServerPath" : "/storage/moved/SouthAsia/",
"ServerName" : "willow.csx.cam.ac.uk",
"ServerKey" : "/storage/app/EWS/SouthAsia/Resources/EWS-Coordinator/ssh_key_willow",
......@@ -32,7 +33,7 @@
"ProcessInJob" : "process_in_job_env2_0",
"ProcessEWSPlotting" : "process_EWS_plotting_env2_0",
"BIN_PATH" : "/storage/app/EWS/General/EWS-met_extractor/",
"TEMPLATE_PATH": "/storage/app/EWS/General/EWS-met_extractor/configs/",
"TEMPLATE_PATH": "/storage/app/EWS/SouthAsia/Resources/EWS-met_extractor/",
"WORK_PATH": "/storage/app/EWS/SouthAsia/Workspace/",
"INPUT_PATH": "/storage/app/EWS/SouthAsia/Workspace/",
"OUTPUT_PATH": "/storage/app/EWS/SouthAsia/Workspace/",
......@@ -126,22 +127,22 @@
"ProcessInJob" : "process_in_job_epi",
"ProcessEWSPlotting" : "do_nothing",
"Deposition" : {
"PathTemplate" : "${WorkspacePath}DEPOSITION_${StartString}/WR_NAME_SouthAsia_${StartString}_fc/",
"SuccessFileTemplate" : "${WorkspacePath}DEPOSITION_${StartString}/STATUS_SUCCESS",
"PathTemplate" : "${WorkspacePath}DEPOSITION_${DateString}/WR_NAME_SouthAsia_${StartString}_fc/",
"SuccessFileTemplate" : "${WorkspacePath}DEPOSITION_${DateString}/STATUS_SUCCESS",
"FileNameTemplate" : "deposition_srcs_allregions_C1_T${tIndexPlusOneString}_${iTimeString}.txt",
"FileListerFunction" : "list_deposition_files_operational",
"FileNamePrepared" : "?"
},
"Environment" : {
"PathTemplate" : "${WorkspacePath}ENVIRONMENT_2.0_${StartString}/processed/${SubRegionName}/${DiseaseName}/",
"SuccessFileTemplate" : "${WorkspacePath}ENVIRONMENT_2.0_${StartString}/STATUS_SUCCESS",
"PathTemplate" : "${WorkspacePath}ENVIRONMENT_2.0_${DateString}/processed/${SubRegionName}/${DiseaseName}/",
"SuccessFileTemplate" : "${WorkspacePath}ENVIRONMENT_2.0_${DateString}/STATUS_SUCCESS",
"FileNameTemplate" : "RIE_value.csv",
"FileListerFunction" : "list_env_suit_files_operational",
"FileNamePrepared" : "?"
},
"Host": {
"MaxFieldsPerCell": "1",
"HostRaster": "/storage/home/jws52/projects/EWS-EpiModel/input_SouthAsia/wheat_area_frac_MapSPAM2005_SouthAsia.tif"
"HostRaster": "/storage/app/EWS/SouthAsia/Resources/EWS-EpiModel/wheat_area_frac_MapSPAM2005_SouthAsia.tif"
},
"Epi" : [
{
......@@ -235,24 +236,24 @@
}
},
"Surveys" : {
"variety_names_tidy_fn" : "/storage/app/EWS/General/EWS-advisory-builder/configs/config_SouthAsia_variety_names_tidy.json",
"variety_names_tidy_fn" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/config_SouthAsia_variety_names_tidy.json",
"CountryColumnName" : "country_list",
"SouthAsia" : {
"ShapeFilenameAdmin0" : "/storage/app/EWS/SouthAsia/Documents/shapefiles/AfgBanNep_nogaps_admin0.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/SouthAsia/Documents/shapefiles/AfgBanNep_nogaps_admin0.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/SouthAsia/Documents/shapefiles/Bangladesh_Bhutan_India_Nepal_Pakistan_admin2_tidynames012.shp"
"ShapeFilenameAdmin0" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/AfgBanNep_nogaps_admin0.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/AfgBanNep_nogaps_admin0.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/Bangladesh_Bhutan_India_Nepal_Pakistan_admin2_tidynames012.shp"
},
"Nepal" : {
"ShapeFilenameAdmin0" : "/storage/app/EWS/SouthAsia/Documents/shapefiles/Nepal_admin0.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/SouthAsia/Documents/shapefiles/Nepal_admin1_withwheat_2017-19.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/SouthAsia/Documents/shapefiles/Nepal_admin2.shp"
"ShapeFilenameAdmin0" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/Nepal_admin0.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/Nepal_admin1_withwheat_2017-19.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/Nepal_admin2.shp"
},
"Bangladesh" : {
"ShapeFilenameAdmin0" : "/storage/app/EWS/SouthAsia/Documents/shapefiles/Bangladesh_admin0.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/SouthAsia/Documents/shapefiles/Bangladesh_admin1.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/SouthAsia/Documents/shapefiles/Bangladesh_admin2.shp"
"ShapeFilenameAdmin0" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/Bangladesh_admin0.shp",
"ShapeFilenameAdmin1" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/Bangladesh_admin1.shp",
"ShapeFilenameAdmin2" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/Bangladesh_admin2.shp"
}
},
"logos" : "/storage/app/EWS/SouthAsia/Documents/logos_ARRCC.png"
"logos" : "/storage/app/EWS/SouthAsia/Resources/EWS-advisory-builder/logos_ARRCC.png"
}
}
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