repackaging (phase 1)

Processor.py → coordinator/Processor.py

@@ -289,7 +289,7 @@ def parse_and_check_args(todayString):
 
     if not args.live:
         # remove the log handler that would send emails
-        logger.handlers = [h for h in logger.handlers if not isinstance(h,BufferingSMTPHandler.BufferingSMTPHandler)]
+        logger.handlers = [h for h in logger.handlers if not isinstance(h, BufferingSMTPHandler.BufferingSMTPHandler)]
 
     if not isinstance(args.config_paths,list):
         logger.error('Expecting a list of config paths')
@@ -391,11 +391,11 @@ def run_Process():
 
     workspacePath = universal_config['WorkspacePathout']
 
-    process_pre_job = getattr(ProcessorComponents,universal_config['ProcessPreJob'])
+    process_pre_job = getattr(ProcessorComponents, universal_config['ProcessPreJob'])
 
-    process_in_job = getattr(ProcessorComponents,universal_config['ProcessInJob'])
+    process_in_job = getattr(ProcessorComponents, universal_config['ProcessInJob'])
 
-    process_EWS_plotting = getattr(ProcessorComponents,universal_config['ProcessEWSPlotting'])
+    process_EWS_plotting = getattr(ProcessorComponents, universal_config['ProcessEWSPlotting'])
 
     # determine job directory
     jobPath = f'{workspacePath}{short_name[args.component]}_{args.start_date}'

logs/.gitignore → coordinator/logs/.gitignore

 # Ignore everything in this directory
-*
+.gitignore
 # Except this file
 !.gitignore

run_Processor.sh

@@ -31,7 +31,7 @@ source /storage/app/miniconda3/bin/activate ${conda_env}
 proc_path="$( dirname "$(readlink -f "$0" )" )"
 
 # run the processor with all arguments
-python ${proc_path}/Processor.py "$@"
+python ${proc_path}/coordinator/Processor.py "$@"
 
 # deactivate conda environment
 source /storage/app/miniconda3/bin/deactivate ${conda_env}