adding custom date params to pipeline

.gitlab-ci.yml

@@ -46,7 +46,6 @@ stages:
       - echo "pythonpath - " $PYTHONPATH
 
       - python3 -V  # Print out python version for debugging
-      - pip install coverage
       - mkdir $PACKAGES_DIR
       - mkdir -p $OUTPUT_DIR
       - git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews-source-generation.git" $PACKAGES_DIR/source_gen
@@ -71,6 +70,7 @@ stages:
 
       - ls $PACKAGES_DIR
       - source /storage/app/miniconda3/bin/activate /storage/app/EWS_prod/envs/conda/py3EWS/
+      - pip install coverage
 
 #.full_fat_before_script:
 #  before_script:
@@ -162,7 +162,7 @@ full_fat_depo:
       then
       date=$(date '+%Y-%m-%d-%H%M');
       mkdir ${TEST_WORKSPACE_DIR}/integration/full/${date};
-      cp -rv $OUTPUT_DIR/* ${TEST_WORKSPACE_DIR}/integration/full/${date};
+      cp -r $OUTPUT_DIR/* ${TEST_WORKSPACE_DIR}/integration/full/${date};
       fi
 
   artifacts: