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Gilligan Lab for Epidemiology and Modelling
Wheat rusts
ews-coordinator
Commits
51c0052a
Commit
51c0052a
authored
2 years ago
by
L. Bower
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8c43b447
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configs/docker/build/Dockerfile
+0
-10
0 additions, 10 deletions
configs/docker/build/Dockerfile
tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json
+1
-1
1 addition, 1 deletion
...ources/coordinator/configs/config_EastAfrica_fc_live.json
with
1 addition
and
11 deletions
configs/docker/build/Dockerfile
+
0
−
10
View file @
51c0052a
...
@@ -8,7 +8,6 @@ RUN mkdir -p /storage/app/EWS_prod/regions/EastAfrica/workspace
...
@@ -8,7 +8,6 @@ RUN mkdir -p /storage/app/EWS_prod/regions/EastAfrica/workspace
RUN
mkdir
-p
/storage/app/EWS_prod/regions/SouthAsia/workspace
RUN
mkdir
-p
/storage/app/EWS_prod/regions/SouthAsia/workspace
#copy resources in
#copy resources in
#COPY ./installRPackages.txt /home
COPY
./conda-env-py3EWS-withbuilds.yml .
COPY
./conda-env-py3EWS-withbuilds.yml .
#install system packages
#install system packages
...
@@ -17,15 +16,6 @@ RUN echo "alias e='emacs -nw $1'" >> ~/.bashrc;
...
@@ -17,15 +16,6 @@ RUN echo "alias e='emacs -nw $1'" >> ~/.bashrc;
#sets the timezone to London
#sets the timezone to London
RUN
DEBIAN_FRONTEND
=
noninteractive
TZ
=
Etc/UTC apt-get
-y
install
tzdata
RUN
DEBIAN_FRONTEND
=
noninteractive
TZ
=
Etc/UTC apt-get
-y
install
tzdata
#build R
#RUN wget --quiet https://cran.r-project.org/src/base/R-3/R-3.5.1.tar.gz -O /usr/local/R-3.5.1.tar.gz
#RUN tar -zxvf /usr/local/R-3.5.1.tar.gz -C /usr/local/
#RUN mv /usr/local/R-3.5.1 /usr/local/R
#RUN cd /usr/local/R/;./configure --with-readline=no --with-x=no;make
#install R packages
#RUN /usr/local/R/bin/Rscript installRPackages.txt;
# Install miniconda
# Install miniconda
ENV
CONDA_DIR /storage/app/miniconda3
ENV
CONDA_DIR /storage/app/miniconda3
RUN
wget
--quiet
https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
-O
~/miniconda.sh
RUN
wget
--quiet
https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
-O
~/miniconda.sh
...
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tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json
+
1
−
1
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51c0052a
...
@@ -7,7 +7,7 @@
...
@@ -7,7 +7,7 @@
"WorkspacePath"
:
"set_in_the_code"
,
"WorkspacePath"
:
"set_in_the_code"
,
"ResourcesPath"
:
"../test_data/test_deployment/regions/EastAfrica/resources/"
,
"ResourcesPath"
:
"../test_data/test_deployment/regions/EastAfrica/resources/"
,
"ServerPath"
:
"OVERRIDDEN"
,
"ServerPath"
:
"OVERRIDDEN"
,
"ServerName"
:
"
ewsmanager@willow.csx.cam.ac.uk
"
,
"ServerName"
:
"
OVERRIDDEN, set to empty string in tests
"
,
"ServerKey"
:
"not used, set to empty string in tests"
,
"ServerKey"
:
"not used, set to empty string in tests"
,
"Survey"
:
{
"Survey"
:
{
"ProcessPreJob"
:
"process_pre_job_survey"
,
"ProcessPreJob"
:
"process_pre_job_survey"
,
...
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