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Gilligan Lab for Epidemiology and Modelling
Wheat rusts
ews-coordinator
Commits
360ebe10
Commit
360ebe10
authored
1 year ago
by
L. Bower
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adding airflow installation
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113aae08
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docs/_source/iaas_setup.rst
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360ebe10
...
@@ -138,13 +138,14 @@ mkdir -p /storage/sftp/
...
@@ -138,13 +138,14 @@ mkdir -p /storage/sftp/
chown -R root:root /storage/sftp/
chown -R root:root /storage/sftp/
chmod -R 755 /storage/sftp/
chmod -R 755 /storage/sftp/
###REPEAT THIS PROCESS FOR THE PLANTVILAGE USER####
adduser --no-create-home --shell /usr/sbin/nologin metofficeupload # create the user and an associated group with the same name
adduser --no-create-home --shell /usr/sbin/nologin metofficeupload # create the user and an associated group with the same name
adduser metofficeupload sftponly # add to existing sftponly group to allow (only) the sftp subsystem to be used under the chroot
adduser metofficeupload sftponly # add to existing sftponly group to allow (only) the sftp subsystem to be used under the chroot
mkdir -p /storage/sftp/metofficeupload/upload
mkdir -p /storage/sftp/metofficeupload/upload
chown root:root /storage/sftp/metofficeupload
chown root:root /storage/sftp/metofficeupload
chmod -R 755 /storage/sftp/metofficeupload
chown metofficeupload:metofficeupload /storage/sftp/metofficeupload/upload
chown metofficeupload:metofficeupload /storage/sftp/metofficeupload/upload
chmod -R 755 /storage/sftp/metofficeupload
mkdir -p /storage/sftp/metofficeupload/upload/Ethiopia/fromMO/daily_name
mkdir -p /storage/sftp/metofficeupload/upload/Ethiopia/fromMO/daily_name
mkdir -p /storage/sftp/metofficeupload/upload/Ethiopia/toMO/
mkdir -p /storage/sftp/metofficeupload/upload/Ethiopia/toMO/
...
@@ -153,6 +154,8 @@ sftp metofficeupload@10.136.11.3
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@@ -153,6 +154,8 @@ sftp metofficeupload@10.136.11.3
add the ewsmanager user to metofficeupload group so it can manage files written by this user
add the ewsmanager user to metofficeupload group so it can manage files written by this user
sudo usermod -aG metofficeupload ewsmanager
sudo usermod -aG metofficeupload ewsmanager
###END REPEAT THIS PROCESS FOR THE PLANTVILAGE USER####
Deploy and test the EWS code
Deploy and test the EWS code
----------------------------
----------------------------
...
@@ -496,3 +499,88 @@ check_interval = 0
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@@ -496,3 +499,88 @@ check_interval = 0
shm_size = 0
shm_size = 0
[runners.cache]
[runners.cache]
Airflow installation
====================
Install mysql:
https://www.digitalocean.com/community/tutorials/how-to-install-mysql-on-ubuntu-20-04
sudo apt install mysql-server
sudo systemctl start mysql.service
hack to allow root access via sudo on ubuntu (in the digital ocean docs)
sudo mysql
ALTER USER 'root'@'localhost' IDENTIFIED WITH mysql_native_password BY 'password_here';
exit
sudo mysql_secure_installation
(no opinion on what options are selected, except disabling root access from remote host (yes))
finish the hack for ubuntu root access:
mysql -u root -p
ALTER USER 'root'@'localhost' IDENTIFIED WITH auth_socket;
exit
</end
ubuntu
hack
>
Install Airflow
---------------
https://airflow.apache.org/docs/apache-airflow/stable/installation/installing-from-pypi.html
mkdir
<path>
/airflow
cd airflow
set the airflow home location
export AIRFLOW_HOME=
<path>
/airflow
python3 -m venv airflow-env
source airflow-env/bin/activate
pip install "apache-airflow[celery]==2.7.1" --constraint "https://raw.githubusercontent.com/apache/airflow/constraints-2.7.1/constraints-3.8.txt"
pip check
install docker operator
pip install apache-airflow-providers-docker
Setup mysql database:
mysql -u root -p
CREATE DATABASE airflow_db CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
CREATE USER 'airflow_user' IDENTIFIED BY 'airflow_pass';
GRANT ALL PRIVILEGES ON airflow_db.* TO 'airflow_user';
exit;
set database defaults (sqllite)
airflow db migrate
edit the resulting ${AIRFLOW_HOME}/airflow.cfg file on line 435 to the mysyl database
sql_alchemy_conn = mysql+mysqldb://airflow_user:airflow_pass@localhost:3306/airflow_db
install the mysql provider
pip3 install apache-airflow-providers-mysql
migrate the db again to use mysql this time
airflow db migrate
possible sql mode error:
https://stackoverflow.com/questions/36882149/error-1067-42000-invalid-default-value-for-created-at
create an admin user for the webserver
airflow users create --role Admin --username admin --email lb584@cam.ac.uk --firstname admin --lastname admin --password admin
run the scheduler and the webserver
airflow scheduler;
airflow webserver;
can run as demons with the -D flag
connect to the webserver (note you will only be able to connect on localhost by default)
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