initial commit of full integration tests (wont work)

tests/integration/full/full_test_deposition.py

+import argparse
+import copy
+import os
+import sys
+import unittest
+
+from integration.partial.integration_test_utils import IntegrationTestUtils
+
+
+class TestFullDeposition(unittest.TestCase):
+    TEST_OUT_PATH: str = "not_set"
+    TEST_START_DATE: str = '20230126'
+    TEST_JOB_DIR: str = "DEPOSITION_" + TEST_START_DATE
+
+
+    @classmethod
+    def setUpClass(cls) -> None:
+        # TestFullDeposition.write_temp_run_config_file()
+        # TestFullDeposition.run_depo_pipeline()
+        pass
+
+
+    @staticmethod
+    def write_temp_run_config_file():
+        default_config = IntegrationTestUtils.DEFAULT_CONFIG_FILE_PATH
+        default_config_dict: dict = IntegrationTestUtils.load_json_file(default_config)
+        run_dict: dict = copy.deepcopy(default_config_dict)
+        run_dict['WorkspacePathout'] = TestFullDeposition.TEST_OUT_PATH
+        run_dict['WorkspacePath'] = TestFullDeposition.TEST_OUT_PATH
+
+        IntegrationTestUtils.TEMP_CONFIG_FILE_PATH = TestFullDeposition.TEST_OUT_PATH + "temp_config.json"
+        IntegrationTestUtils.write_json_file(run_dict, IntegrationTestUtils.TEMP_CONFIG_FILE_PATH)
+
+
+    @staticmethod
+    def run_depo_pipeline():
+        component = 'Deposition'
+        IntegrationTestUtils.run_external_pipeline(component,
+                                                   TestFullDeposition.TEST_START_DATE,
+                                                   IntegrationTestUtils.EMAIL_CRED_PATH)
+
+
+    def test_standard_run_input_status_success(self):
+        status_file_path = os.path.join(TestFullDeposition.TEST_OUT_PATH, TestFullDeposition.TEST_JOB_DIR, "STATUS_SUCCESS")
+        success_file_exists: bool = os.path.isfile(status_file_path)
+        self.assertTrue(success_file_exists)
+
+
+    def test_standard_run_input_all_regions_ran(self):
+        """
+        working on the assumption that if there are images for each region, it must have run through
+        (at least past the region iteration)
+        """
+
+        east_africa_image_path = os.path.join(TestFullDeposition.TEST_OUT_PATH, TestFullDeposition.TEST_JOB_DIR,
+                                              "plotting", "eastafrica", "images", "Weekly",
+                                              "deposition_eastafrica_leaf_rust_total_202301260000_202302020000_map.png")
+        ethiopia_image_path = os.path.join(TestFullDeposition.TEST_OUT_PATH, TestFullDeposition.TEST_JOB_DIR,
+                                           "plotting", "ethiopia", "images", "Weekly",
+                                           "deposition_ethiopia_leaf_rust_total_202301260000_202302020000_map.png")
+
+        ea_file_exists: bool = os.path.isfile(east_africa_image_path)
+        eth_file_exists: bool = os.path.isfile(ethiopia_image_path)
+        self.assertTrue(ea_file_exists)
+        self.assertTrue(eth_file_exists)
+
+
+    def test_standard_run_all_input_csvs_produced(self):
+        east_africa_csv_path = os.path.join(TestFullDeposition.TEST_OUT_PATH, TestFullDeposition.TEST_JOB_DIR,
+                                            "plotting", "eastafrica", "input_csvs", "*.csv")
+        ethiopia_csv_path = os.path.join(TestFullDeposition.TEST_OUT_PATH, TestFullDeposition.TEST_JOB_DIR,
+                                         "plotting", "ethiopia", "input_csvs", "*.csv")
+
+        ea_csv_count: int = IntegrationTestUtils.count_files_in_wildcard(east_africa_csv_path)
+        eth_csv_count: int = IntegrationTestUtils.count_files_in_wildcard(ethiopia_csv_path)
+        self.assertEqual(9, ea_csv_count)
+        self.assertEqual(27, eth_csv_count)
+
+
+    def test_standard_run_all_images_produced(self):
+        east_africa_image_path = os.path.join(TestFullDeposition.TEST_OUT_PATH, TestFullDeposition.TEST_JOB_DIR,
+                                              "plotting", "eastafrica", "images", "Weekly", "*.png")
+        ethiopia_image_path = os.path.join(TestFullDeposition.TEST_OUT_PATH, TestFullDeposition.TEST_JOB_DIR,
+                                           "plotting", "ethiopia", "images", "Weekly", "*.png")
+
+        ea_csv_count: int = IntegrationTestUtils.count_files_in_wildcard(east_africa_image_path)
+        eth_csv_count: int = IntegrationTestUtils.count_files_in_wildcard(ethiopia_image_path)
+        self.assertEqual(3, ea_csv_count)
+        self.assertEqual(6, eth_csv_count)
+
+
+if __name__ == '__main__':
+    parser = argparse.ArgumentParser()
+    parser.add_argument('--config', required = True)
+    parser.add_argument('--outdir', required = True)
+    parser.add_argument('--email_cred', required = True)
+    parser.add_argument('unittest_args', nargs='*')
+
+    _args = parser.parse_args()
+    _config_file: str = _args.config
+    _outdir: str = _args.outdir
+    _email_cred_path: str = _args.email_cred
+
+    IntegrationTestUtils.DEFAULT_CONFIG_FILE_PATH = _config_file
+
+    TestFullDeposition.TEST_OUT_PATH = _outdir
+    IntegrationTestUtils.EMAIL_CRED_PATH = _email_cred_path
+
+    # Now set the sys.argv to the unittest_args (leaving sys.argv[0] alone)
+    sys.argv[1:] = _args.unittest_args
+    unittest.main()

tests/integration/full/full_test_survey.py

+import argparse
+import copy
+import os
+import sys
+import unittest
+
+from integration.partial.integration_test_utils import IntegrationTestUtils
+
+
+class FullTestSurvey(unittest.TestCase):
+
+    TEST_OUT_PATH: str = "not_set"
+    TEST_START_DATE: str = '20230126'
+    TEST_JOB_DIR: str = "SURVEYDATA_" + TEST_START_DATE
+
+    @classmethod
+    def setUpClass(cls) -> None:
+        FullTestSurvey.write_temp_run_config_file()
+        FullTestSurvey.run_survey_pipeline()
+
+
+    @staticmethod
+    def write_temp_run_config_file():
+        default_config = IntegrationTestUtils.DEFAULT_CONFIG_FILE_PATH
+        default_config_dict: dict = IntegrationTestUtils.load_json_file(default_config)
+        run_dict: dict = copy.deepcopy(default_config_dict)
+        run_dict['WorkspacePathout'] = FullTestSurvey.TEST_OUT_PATH
+        run_dict['WorkspacePath'] = FullTestSurvey.TEST_OUT_PATH
+        # run_dict['Survey']['SkipServerDownload'] = True
+        run_dict['Survey']['SkipServerDownload'] = False
+        # run_dict['ServerName'] = ''  # nothing, as local machine
+
+        IntegrationTestUtils.TEMP_CONFIG_FILE_PATH = FullTestSurvey.TEST_OUT_PATH + "temp_config.json"
+        IntegrationTestUtils.write_json_file(run_dict, IntegrationTestUtils.TEMP_CONFIG_FILE_PATH)
+
+    @staticmethod
+    def unpack_dependencies():
+        IntegrationTestUtils.unpack_zip(IntegrationTestUtils.EXAMPLE_SURVEY_FILE_PATH, FullTestSurvey.TEST_OUT_PATH)
+
+    @staticmethod
+    def run_survey_pipeline():
+        component = 'Survey'
+        IntegrationTestUtils.run_external_pipeline(component,
+                                                   FullTestSurvey.TEST_START_DATE,
+                                                   IntegrationTestUtils.EMAIL_CRED_PATH)
+
+
+    def test_standard_run_input_status_success(self):
+        status_file_path = os.path.join(FullTestSurvey.TEST_OUT_PATH, FullTestSurvey.TEST_JOB_DIR, "STATUS_SUCCESS")
+        success_file_exists: bool = os.path.isfile(status_file_path)
+        self.assertTrue(success_file_exists)
+
+    def test_standard_run_input_merged_survey_created(self):
+        status_file_path = os.path.join(FullTestSurvey.TEST_OUT_PATH, FullTestSurvey.TEST_JOB_DIR,
+                                        "ExportCSV", "Merged_SurveyData.csv")
+        success_file_exists: bool = os.path.isfile(status_file_path)
+        file_not_empty: bool = IntegrationTestUtils.check_file_not_empty(status_file_path)
+        self.assertTrue(success_file_exists)
+        self.assertTrue(file_not_empty)
+
+
+if __name__ == '__main__':
+    parser = argparse.ArgumentParser()
+    parser.add_argument('--config', required = True)
+    parser.add_argument('--outdir', required = True)
+    parser.add_argument('--email_cred', required = True)
+    parser.add_argument('unittest_args', nargs='*')
+
+    _args = parser.parse_args()
+    _config_file: str = _args.config
+    _outdir: str = _args.outdir
+    _email_cred_path: str = _args.email_cred
+
+    IntegrationTestUtils.DEFAULT_CONFIG_FILE_PATH = _config_file
+
+    FullTestSurvey.TEST_OUT_PATH = _outdir
+    IntegrationTestUtils.EMAIL_CRED_PATH = _email_cred_path
+
+    # Now set the sys.argv to the unittest_args (leaving sys.argv[0] alone)
+    sys.argv[1:] = _args.unittest_args
+    unittest.main()