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# This file is a template, and might need editing before it works on your project.
# Official language image. Look for the different tagged releases at:
# https://hub.docker.com/r/library/python/tags/
image: lb584/ews_coordinator:latest
# Change pip's cache directory to be inside the project directory since we can
# only cache local items.
variables:
PIP_CACHE_DIR: "$CI_PROJECT_DIR/.cache/pip"
PACKAGES_DIR: "$CI_PROJECT_DIR/packages/"
# Pip's cache doesn't store the python packages
# https://pip.pypa.io/en/stable/reference/pip_install/#caching
#
# If you want to also cache the installed packages, you have to install
# them in a virtualenv and cache it as well.
cache:
paths:
- .cache/pip
- venv/
before_script:
- python3 -V # Print out python version for debugging
# - apt-get install --assume-yes git
- echo $PACKAGES_DIR
- mkdir $PACKAGES_DIR
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews-source-generation.git" $PACKAGES_DIR/source_gen
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews_plotting.git" $PACKAGES_DIR/plotting
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/flagdir.git" $PACKAGES_DIR/flagdir
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews-epimodel.git" $PACKAGES_DIR/epimodel
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews-advisory-builder.git" $PACKAGES_DIR/advisory_builder
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews_environmental_suitability_v2.git" $PACKAGES_DIR/environmental_suitability
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews-postprocessing.git" $PACKAGES_DIR/post_processing
- git clone "https://nouser:$GROUP_WHEAT_ACCESS_VAR@gitlab.developers.cam.ac.uk/gilligan-epid/wheat-rusts/ews_met_data_extraction.git" $PACKAGES_DIR/met_extractor_v2
- ls $PACKAGES_DIR
- source /storage/app/miniconda3/bin/activate /storage/app/EWS_prod/envs/conda/py3EWS/
- pwd
- flagdir=$PACKAGES_DIR/flagdir
- epimodel=$PACKAGES_DIR/epimodel
- advisory=$PACKAGES_DIR/advisory_builder
- met_processing=$PACKAGES_DIR/met_extractor_v2/met_data_extraction
- met_processor=$PACKAGES_DIR/environmental_suitability/environmental_suitability
- plotting=$PACKAGES_DIR/plotting/plotting
- post_processing=$PACKAGES_DIR/post_processing/ews_postprocessing
- source_gen=$PACKAGES_DIR/source_gen
- coordinator=$CI_PROJECT_DIR/coordinator
- coordinator_tests=$CI_PROJECT_DIR/tests
- export PYTHONPATH=$PYTHONPATH:$flagdir:$epimodel:$advisory:$met_processing:$met_processor:$plotting:$source_gen:$post_processing:$coordinator:$coordinator_tests
test:
script:
- echo $PYTHONPATH
- python3 -m unittest tests/unit/coordinator/example_test.py