update methods to get correct placement.

solventmapcreator/solvationcalculation/fgipmaker.py

@@ -23,11 +23,8 @@ def create_fgip_from_map(map_filename):
     """
     svg_figure = create_svgfigure()
     map_plot = get_svg_plot(map_filename)
-    map_plot.moveto(0.0,150.0, scale=1.1)
-    molecules_plot = get_molecules()
-    
+    map_plot.moveto(0.0,95.0,scale=1.25)
     append_svg_plots(svg_figure, map_plot)
-    append_svg_plots(svg_figure, molecules_plot)
     output_filename = create_output_filename(map_filename)
     save_svg_figure(svg_figure, output_filename)
 
@@ -46,11 +43,6 @@ def append_svg_plots(svg_figure, svg_plot):
     """
     svg_figure.append(svg_plot)
 
-def get_molecules():
-    """This gets the molecules.
-    """
-    return get_svg_plot(FGIP_MOLECULES_FILENAME)
-
 def get_svg_plot(svg_filename):
     """This gets the plot elements.
     """
@@ -58,7 +50,7 @@ def get_svg_plot(svg_filename):
     return figure.getroot()
 
 def create_svgfigure():
-    """This creates SVG figure with default size.
+    """This creates SVG figure using the molecules as a base.
     """
-    return svgt.SVGFigure(width="725.05334pt", height="676.02484pt")
+    return svgt.fromfile(FGIP_MOLECULES_FILENAME)