From a2008f71c2f800a9f51a669c6c608867985fad5a Mon Sep 17 00:00:00 2001
From: Yassin Refahi <yassin.refahi@gmail.com>
Date: Fri, 3 Apr 2020 13:55:20 +0000
Subject: [PATCH] Update README.md

---
 geneExpressionData/AtlasViewerFormat/README.md | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/geneExpressionData/AtlasViewerFormat/README.md b/geneExpressionData/AtlasViewerFormat/README.md
index 0553fb4..254475b 100644
--- a/geneExpressionData/AtlasViewerFormat/README.md
+++ b/geneExpressionData/AtlasViewerFormat/README.md
@@ -1,4 +1,10 @@
 ## Gene expression data in AtlasViewer format
 
-Each folder contains gene expression data in AtlasViewer format for a specific layer (L1, L2, L1&L2) and all cells.
+Each folder contains gene expression data in AtlasViewer format for a specific 
+layer (L1, L2, L1&L2) and all cells.
+
+To visualise patterns, first run AtlasViewer via atlasviewer/launch_aviewer.py. 
+Drag and drop the segmentation file and the visualization widget and then drag 
+and drop the pattern file. Select the genes to visualize form the right pane and
+click "Atlas gene expression" button from the AtlasViewer menu.
 
-- 
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