Big mmcif management
Randy reported a case that should be checked and investigsted:
Hi Massimo,
Don’t worry about this until you’re back at work next week, but I didn’t want to forget to ask!
I’m just looking into a crash reported for MRage. I haven’t gotten to the bottom of it but one thing I noticed was that it failed to fetch one PDB entry, i.e. 6qw6. It turns out this is a large cryo-EM structure available only in mmCIF format. Just making sure — would Voyager cope properly with such a case?
Thanks!
Randy
Hi Massimo,
Here is the HHpred file, but remember it’s confidential because the structure is unsolved and unpublished. I would have to ask the user if I could share the data with you, but the HHpred should be enough to see if you can obtain the model.
The problem with his case might actually be because the space group is P1. You’ll definitely want to test Voyager in some P1 cases, because of the special status of the rotation search for the first molecule!