PDN Canto Config issueshttps://gitlab.developers.cam.ac.uk/jwrn3/pdn-canto-config/-/issues2021-04-09T10:18:12Zhttps://gitlab.developers.cam.ac.uk/jwrn3/pdn-canto-config/-/issues/5Input Device is not a TTY error2021-04-09T10:18:12ZJames NairnInput Device is not a TTY errorFollowing upgrade to docker-ce 5:19.03.14~3-0~ubuntu-xenial an issue has arisen causing "the input device is not a TTY" errors.Following upgrade to docker-ce 5:19.03.14~3-0~ubuntu-xenial an issue has arisen causing "the input device is not a TTY" errors.https://gitlab.developers.cam.ac.uk/jwrn3/pdn-canto-config/-/issues/4set new weekly routine to export data from canto2020-11-18T10:37:56ZVitor Troviscoset new weekly routine to export data from cantoHi James,
We will need to set up a second weekly routine, this time to export data from canto.
This one is to run on Wednesdays at noon and is much simpler than weekly_routine.sh
I have added the draft script weekly_export.sh to the ma...Hi James,
We will need to set up a second weekly routine, this time to export data from canto.
This one is to run on Wednesdays at noon and is much simpler than weekly_routine.sh
I have added the draft script weekly_export.sh to the master branch (also in attachment).
It is as complete as I could make it (I piggy-backed on your work on weekly_routine.sh, so it will have a similar format). Could you please have a look at it? I have tested it and
Hopefully, you will only have to add the timer!
Happy to chat about it and thanks
[weekly_export.sh](/uploads/a8482643ded4e89ad6ff29ce74a49019/weekly_export.sh)James NairnJames Nairnhttps://gitlab.developers.cam.ac.uk/jwrn3/pdn-canto-config/-/issues/3Edits to contents of /data/export/canto-space/import_export/ are not being pi...2020-10-22T12:53:45ZJames NairnEdits to contents of /data/export/canto-space/import_export/ are not being picked up correctlyJWRN to investigate using a stored SHA hash of the file to compare against from the previous run of the script. If the hash changes then the file has changed and ontologies need reloading.JWRN to investigate using a stored SHA hash of the file to compare against from the previous run of the script. If the hash changes then the file has changed and ontologies need reloading.James NairnJames Nairnhttps://gitlab.developers.cam.ac.uk/jwrn3/pdn-canto-config/-/issues/2Log file is overwritten each time2020-10-22T12:58:10ZJames NairnLog file is overwritten each timeChange to appending rather than overwriting.Change to appending rather than overwriting.https://gitlab.developers.cam.ac.uk/jwrn3/pdn-canto-config/-/issues/1Archive Created Import Files2020-10-22T13:05:30ZJames NairnArchive Created Import FilesArchive the following files for reference afterwards.
- fbrf_input_list.tsv
- import_export/import-fbrfs.jsonArchive the following files for reference afterwards.
- fbrf_input_list.tsv
- import_export/import-fbrfs.json