From f2e54b7d79506418bceab0731b454a09e65cfe07 Mon Sep 17 00:00:00 2001
From: Vitor Trovisco <vmt25@cam.ac.uk>
Date: Thu, 4 Aug 2022 10:14:37 +0000
Subject: [PATCH] in comments, removed the exact file-path to canto-space in
flybase-vm, to make it more generic
---
canto/canto_deploy.yaml | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/canto/canto_deploy.yaml b/canto/canto_deploy.yaml
index 57bab91..7c33833 100644
--- a/canto/canto_deploy.yaml
+++ b/canto/canto_deploy.yaml
@@ -15,17 +15,17 @@ annotation_figure_field: 0
# disable deletion buttons on genotype management page?
show_quick_deletion_buttons: 0
-# this will define Canto's internal SQL database (track.sqlite3 and files for all curation sessions) to the the 'data' sub-folder of 'canto-space' (/data/export/canto-space/data), which is where all data should reside.
-# Here filepaths are relative. Have an initial '/' in '/data/track.sqlite3' and '/data' below, otherwise track.sqlite3 and the data will appear in '/data/export/canto-space/canto/data' rather than in '/data/export/canto-space/data'.
+# this will define Canto's internal SQL database (track.sqlite3 and files for all curation sessions) to the the 'data' sub-folder of 'canto-space' (<filepath>/canto-space/data), which is where all data should reside.
+# Here filepaths are relative. Have an initial '/' in '/data/track.sqlite3' and '/data' below, otherwise track.sqlite3 and the data will appear in '<filepath>/canto-space/canto/data' rather than in '<filepath>/canto-space/data'.
Model::TrackModel:
connect_info:
# this sets the path (and name) of the sqlite3 file (track.sqlite3), which queries curation sessions within canto
-# make sure it does include the initial '/', otherwise curation session will be misplaced in '/data/export/canto-space/canto/data'
+# make sure it does include the initial '/', otherwise curation session will be misplaced in '<filepath>/canto-space/canto/data'
# Make sure the folder where the SQL database 'track.sqlite3' lives (/data in /data/track.sqlite3) matches the data_directory value (/data)
- dbi:SQLite:dbname=/data/track.sqlite3
schema_class: Canto::TrackDB
# this sets the path to the 'data' sub-folder of 'canto-space', which is where all curation data should reside.
-# make sure it does include the initial '/', otherwise curation session will be misplaced in '/data/export/canto-space/canto/data'
+# make sure it does include the initial '/', otherwise curation session will be misplaced in '<filepath>/canto-space/canto/data'
# and make sure the folder where the SQL database 'track.sqlite3' lives (/data/track.sqlite3) matches the data_directory value (/data)
data_directory: /data
--
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