From a79dc0ed7247eb841753e54496b6958ce7878204 Mon Sep 17 00:00:00 2001
From: Vitor Trovisco <vmt25@cam.ac.uk>
Date: Thu, 7 Oct 2021 09:43:26 +0000
Subject: [PATCH] Update weekly_export.sh - edits to copy the export json into
its dedicated folder within flybase-vm's archives:
/data/export/archives/canto_export_json
---
weekly_export.sh | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/weekly_export.sh b/weekly_export.sh
index 98c21bd..4ea5abe 100755
--- a/weekly_export.sh
+++ b/weekly_export.sh
@@ -28,6 +28,8 @@ EXPORT_DIR="${CANTOSPACE}/import_export"
#Define export filename
EXPORT_FILENAME=canto_server_export_latest.json
+#Define filepath to dedicated archives folder at export-vm
+EXPORTVM_EXPORT_ARCHIVE="$/data/export/archives/canto_export_json"
log "Starting"
@@ -37,7 +39,7 @@ if ./canto/script/canto_docker --non-interactive ./script/canto_export.pl canto
if [[ -e "${EXPORT_DIR}/${EXPORT_FILENAME}" ]]; then
- # Create archive directory if required
+ # Create archive directory in canto-space if required
ARCHIVE="${CANTOSPACE}/archive"
if [[ ! -d "${ARCHIVE}" ]]; then
@@ -59,7 +61,7 @@ if ./canto/script/canto_docker --non-interactive ./script/canto_export.pl canto
}
- for FILE in "${ARCHIVE}/${EXPORT_FILENAME_ARCHIVE}" "${EXPORT_DIR}/${EXPORT_FILENAME_ARCHIVE}"; do
+ for FILE in "${ARCHIVE}/${EXPORT_FILENAME_ARCHIVE}" "${EXPORTVM_EXPORT_ARCHIVE}"; do
archiving ${FILE}
done
--
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