From 871b70f2c9afb5803bbe0958a3cb17277ac84027 Mon Sep 17 00:00:00 2001
From: Vitor Trovisco <vmt25@cam.ac.uk>
Date: Sun, 31 Jul 2022 00:11:16 +0000
Subject: [PATCH] Update canto_deploy.yaml - configure the disease interaction
annotation type
---
canto/canto_deploy.yaml | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/canto/canto_deploy.yaml b/canto/canto_deploy.yaml
index d71e184..09bb423 100644
--- a/canto/canto_deploy.yaml
+++ b/canto/canto_deploy.yaml
@@ -299,6 +299,26 @@ available_annotation_type_list:
detailed_help_path:
+ - name: disease_interaction
+ category: interaction
+ namespace: disease_ontology
+ term_suggestions_annotation_type: disease_ontology
+ interaction_term_required: 1
+ #allow_annotation_transfer - use true/false
+ allow_annotation_transfer: true
+ hide_extension_relations: [qual,dv_qual]
+ display_name: 'disease_(DO)_interaction'
+ very_short_display_name: 'DO interaction'
+ short_display_name: 'DO interaction'
+ feature_type: 'metagenotype'
+ help_text: 'Examples: ameliorated by, exacerbated by, NOT ameliorated by, NOT exacerbated by.'
+ evidence_codes:
+ - "ameliorated by"
+ - "exacerbated by"
+ - "NOT ameliorated by"
+ - "NOT exacerbated by"
+ detailed_help_path: /docs/genetic_interaction_annotation
+
# Which of the annotation types listed above (under 'available_annotation_type_list:') to display and enable.
enabled_annotation_type_list:
@@ -310,6 +330,7 @@ enabled_annotation_type_list:
- rescue
- expression
- disease_(DO)
+ - disease_interaction
ontology_namespace_config:
--
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