From 31b7c36ddd7929aaa1d075a9413f9296d4b1a0b9 Mon Sep 17 00:00:00 2001
From: Vitor Trovisco <vmt25@cam.ac.uk>
Date: Tue, 24 Nov 2020 12:44:08 +0000
Subject: [PATCH] Add new file - canto_running_log.sh This script prints all
the activity log from the running canto-server container into the file
'canto_running.log' in the 'logs' sub-folder of 'canto-space'
---
canto_running_log.sh | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
create mode 100644 canto_running_log.sh
diff --git a/canto_running_log.sh b/canto_running_log.sh
new file mode 100644
index 0000000..bb2d5fb
--- /dev/null
+++ b/canto_running_log.sh
@@ -0,0 +1,30 @@
+#!/bin/bash
+
+#this script prints all the activity log messages from the running canto-server container into the file 'canto_running.log' in the 'logs' sub-folder of 'canto-space'
+
+# Define canto-space root
+CANTOSPACE="/data/export/canto-space"
+
+# Define logs folder inside canto-space
+LOGS="logs"
+
+# Define log file
+LOGFILE="${CANTOSPACE}/${LOGS}/canto_server_running.log"
+
+#this line retrieves the canto container id
+DOCKERNAME=$(docker ps -a --filter status=running | awk '$2 ~ /pombase\/canto-run/ { print $1 }')
+
+ if [[ ! -z "${DOCKERNAME}" ]]; then
+ echo "Canto running on container ${DOCKERNAME} - see canto_server_running.log for the log messages"
+
+ # Redirect all output to logfile
+ exec &> "${LOGFILE}"
+
+ #docker logs is docker's command to retrieve all log messages from a specific container
+ docker logs "${DOCKERNAME}"
+
+ else echo "Canto not running - no log messages to show"
+
+ fi
+
+exit
\ No newline at end of file
--
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