From f7113a18a4000ba3ea09f2aa8e68bb3e0f245fec Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Tue, 14 Mar 2023 17:28:20 +0000
Subject: [PATCH] adding some missing import statements
---
tests/integration/partial/test_epi.py | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/tests/integration/partial/test_epi.py b/tests/integration/partial/test_epi.py
index 2858e09..f644e09 100644
--- a/tests/integration/partial/test_epi.py
+++ b/tests/integration/partial/test_epi.py
@@ -28,12 +28,15 @@ class TestEpi(unittest.TestCase):
default_config = IntegrationTestUtils.DEFAULT_CONFIG_FILE_PATH
default_config_dict: dict = IntegrationTestUtils.load_json_file(default_config)
run_dict: dict = copy.deepcopy(default_config_dict)
- TestEpi.TEST_OUT_PATH = run_dict['WorkspacePathout'] + prefix + os.sep
+ TestEpi.TEST_OUT_PATH = IntegrationTestUtils.TEST_WORKSPACE_PATH + prefix + os.sep
run_dict['WorkspacePathout'] = TestEpi.TEST_OUT_PATH
run_dict['WorkspacePath'] = TestEpi.TEST_OUT_PATH
run_dict['ServerName'] = '' # nothing, as local machine
- IntegrationTestUtils.write_json_file(run_dict, IntegrationTestUtils.TEMP_CONFIG_FILE_NAME)
+ os.makedirs(TestEpi.TEST_OUT_PATH, exist_ok = True)
+ IntegrationTestUtils.TEMP_CONFIG_FILE_NAME = TestEpi.TEST_OUT_PATH + "temp_config.json"
+ name = IntegrationTestUtils.TEMP_CONFIG_FILE_NAME
+ IntegrationTestUtils.write_json_file(run_dict, name)
@staticmethod
--
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