From f4935e372abe6a90f27943477600bc8813fe6618 Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Tue, 31 Jan 2023 15:06:32 +0000
Subject: [PATCH] trying to get full integrations test working via runner
---
.gitlab-ci.yml | 22 +++++++++++++++++++++-
1 file changed, 21 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index e964d14..98b2cea 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -54,7 +54,24 @@ stages:
.full_fat_before_script:
before_script:
- - CI_PYTHON_PATH="cakebar"
+ - source /storage/app/miniconda3/bin/activate /storage/app/EWS_prod/envs/conda/py3EWS/
+ - pip install coverage
+ - pwd
+ - CODE_DIR="/storage/app/EWS_prod/code/"
+ - flagdir=$CODE_DIR/flagdir
+ - epimodel=$CODE_DIR/epimodel
+ - advisory=$CODE_DIR/advisory_builder
+ - met_processing=$CODE_DIR/met_extractor_v2/met_data_extraction
+ - met_processor=$CODE_DIR/environmental_suitability/environmental_suitability
+ - plotting=$CODE_DIR/plotting/plotting
+ - post_processing=$CODE_DIR/post_processing/ews_postprocessing
+ - source_gen=$CODE_DIR/source_gen
+ - coordinator=$CODE_DIR/coordinator
+ - coordinator_tests=$CODE_DIR/tests
+ - export PYTHONPATH=$PYTHONPATH:$flagdir:$epimodel:$advisory:$met_processing:$met_processor:$plotting:$source_gen:$post_processing:$coordinator:$coordinator_tests
+
+ - echo $PYTHONPATH
+ - CI_PYTHON_PATH=$PYTHONPATH
half_fat_tests:
when: manual
@@ -110,4 +127,7 @@ manual_job:
- export PYTHONPATH="$CI_PYTHON_PATH"
- echo $PYTHONPATH
- echo "this is a manual job"
+ - full_test_deposition.py --config /storage/app/EWS_prod/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json \
+ --outdir /storage/app/EWS_prod/regions/EastAfrica/workspace/ \
+ --email_cred /storage/app/EWS_prod/envs/credentials/Cred_gmail.json
--
GitLab