diff --git a/coordinator/EnvSuitPipeline.py b/coordinator/EnvSuitPipeline.py index 5fb07ec844d160b61f239b4b90b162831720ddac..0cc0ea8999188f6aed8d6bdf19e2f91482ef3fe7 100644 --- a/coordinator/EnvSuitPipeline.py +++ b/coordinator/EnvSuitPipeline.py @@ -286,6 +286,13 @@ def run_pipeline(pipeline_config, region, dateString, extracted = False, prevent os.makedirs(strain_outPath) shutil.copy(resultFile,strain_outFile) + + # todo - Add a flad to this part of the code to enable/dosable csv writing as an option + resultCSVFile = envSuitPath + 'RIE.csv' + if os.path.isfile(resultCSVFile): + strain_outFile = strain_outPath + '/RIE_value.csv' + shutil.copy(resultCSVFile,strain_outFile) + logger.info(f"{strain} result successfully created and moved to {strain_outPath}/") logger.info('SUCCESSFULLY FINISHED')