diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index c85ccb3d3f9cafe9fed69176eaccfa468ad390a5..da0d1111e2b3d3abba71c65e53c0d6cdea108f34 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -136,7 +136,7 @@ epi_fit: mkdir $CI_PROJECT_DIR/fitting_outputs - python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit.py + python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/epi_fit_S3_H4_D1_M1_F2_Q1_short_epi.json $CI_PROJECT_DIR/fitting_outputs/ 2016 diff --git a/ews/coordinator/processor_base.py b/ews/coordinator/processor_base.py index a7de1fd8e63787fef2fa02edc9e3af521882ed8a..fb905c664910cfb945de19d4588c8aa5a5d60a0d 100755 --- a/ews/coordinator/processor_base.py +++ b/ews/coordinator/processor_base.py @@ -238,6 +238,7 @@ class ProcessorBase: # read the run config json, and replace any tokens with values from the sys_config (such at the # directory root for the installation) config: dict = parse_json_file_with_tokens(config_path, sys_config) + self.config = config # set the class variable so it can be accessed externally # then add the sys_config keys and values to the configjson for k, v in sys_config.items():