diff --git a/coordinator/ProcessorEpidemiology.py b/coordinator/ProcessorEpidemiology.py index 31656accdae4bccc738ed7c9174ebab011f65988..17b5f6ccd9a7c43f413afa8a931464bea97a5b08 100644 --- a/coordinator/ProcessorEpidemiology.py +++ b/coordinator/ProcessorEpidemiology.py @@ -312,18 +312,22 @@ class ProcessorEpidemiology(Processor): # TODO: Some of this is modifying config before epi model is run. Determine # how to account for that - + # If this job is continuing the results of a past epi run, there are # several additional requirements: - # - The epi model will be expected to run from the reference date to the - # end date, and the start date to reference date defines the range of the - # job that is being continued. + # - The epi model will run from the reference date to the end date. The + # start date to reference date defines the range of the job that is being + # continued. - # - Each model named under config['Epidemiology']['Epi'] will also need a + # - Each model named under config['Epidemiology']['Epi'] will need a # corresponding set of arguments for reading in as for depo and env, e.g. # config['Epidemiology']['model_name']. + # - depo and env file listers will be applied only for the reference date + # to end date, so choose an apporporiate lister, e.g. + # list_onefile_operational + is_continue = config['Epidemiology'].get('continue',False) # initialise any needed variables