From d19067c43207681538701a9ddcfe5c69ab5e3ece Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Tue, 24 Sep 2024 14:40:26 +0100
Subject: [PATCH] adding file-based logging to epi fit (to allow different
 configuration when running in gitlab-ci)

---
 .gitlab-ci.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 89f22c8..e44ec9b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -140,6 +140,10 @@ epi_fit:
       
       OUTPUT_DIR="/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/"
 
+      LOGGING_CONFIG_FILE_PATH="/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/epi_log_config.json"
+      
+      export LOGGING_CONFIG_FILE_PATH
+      
       python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py
       /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/sys_config_epi_remote.json
       /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/run_config_epi_long_remote.json
-- 
GitLab