diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 47e79a2b525a76072dcd2ed4217fa52aae582fb5..d5753f23da4b1c6b264bb8ddfa2c751758848fdd 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -24,6 +24,7 @@ stages: - docs - half-fat - full-fat + - epi-fit .before_script: before_script: @@ -124,6 +125,17 @@ full_fat_depo: - $CI_PROJECT_DIR/test_reports expire_in: 10 days +epi_fit: + when: manual + stage: epi-fit + extends: .before_script + tags: ["ewas-production"] + script: + - > + cd $PACKAGES_DIR/epimodel/ews/epi_model + + python3 fit.py /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/epi_fit_S3_H4_D1_M1_F2_Q1_short.json /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/run_S3_H4_C3_D1_M1_F2_Q1_2016/outputty/ 2016 + full_fat_env_suit: when: manual stage: full-fat