From a91c41e24d33e70182e889dfd44821ffaedd16b4 Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Fri, 23 Aug 2024 16:43:41 +0100
Subject: [PATCH] running command from new location
---
.gitlab-ci.yml | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 1586e24..23d1c8b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -132,13 +132,13 @@ epi_fit:
tags: ["ewas-production"]
script:
- >
- cd $PACKAGES_DIR/epimodel/ews/epi_model
+ cd $CI_PROJECT_DIR
- python3 fit.py /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/epi_fit_S3_H4_D1_M1_F2_Q1_short.json /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/ 2016
+ python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit.py /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/epi_fit_S3_H4_D1_M1_F2_Q1_short.json /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/ 2016
artifacts:
when: always
paths:
- - $PACKAGES_DIR/epimodel/ews/epi_model/*.log
+ - $CI_PROJECT_DIR/*.log
expire_in: 10 days
full_fat_env_suit:
--
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