From a3f8fd9dfb12e0cb9b3c562981d819a072b2ee2b Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Tue, 24 Sep 2024 15:02:51 +0100
Subject: [PATCH] adding file-based logging to epi fit (to allow different
configuration when running in gitlab-ci)
---
.gitlab-ci.yml | 7 -------
1 file changed, 7 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 51b2240..f4bcf42 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -129,7 +129,6 @@ epi_fit:
when: manual
stage: epi-fit
extends: .before_script
- allow_failure: true
tags: ["ewas-production"]
script:
@@ -146,12 +145,6 @@ epi_fit:
export LOGGING_CONFIG_FILE_PATH
- python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py
- /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/sys_config_epi_remote.json
- /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/run_config_epi_long_remote.json
- $OUTPUT_DIR
- 2016
-
mkdir $CI_PROJECT_DIR/fitting_outputs
cp -rv $OUTPUT_DIR/*.csv $OUTPUT_DIR/*.json $OUTPUT_DIR/parameter_sweep_heatmaps $CI_PROJECT_DIR/fitting_outputs/
--
GitLab