diff --git a/tests/integration/partial/integration_test_utils.py b/tests/integration/partial/integration_test_utils.py index 24fc2933e6d1dff391772f60a9663b95536d9bc6..ff5441875dd0228219c36746bf68e7c5a8a335d7 100644 --- a/tests/integration/partial/integration_test_utils.py +++ b/tests/integration/partial/integration_test_utils.py @@ -4,6 +4,7 @@ import glob import json import os from importlib import reload + from typing import List, Type from unittest import TestSuite, TestLoader, TestCase, TestResult from zipfile import ZipFile diff --git a/tests/integration/test_suites/epi_test_suite.py b/tests/integration/test_suites/epi_test_suite.py index ab09140ae099953d40926a97bdaa69d56fd267fa..30c46dd591943af9e004299087b797b957c2640a 100644 --- a/tests/integration/test_suites/epi_test_suite.py +++ b/tests/integration/test_suites/epi_test_suite.py @@ -70,7 +70,7 @@ class BaseEpiTestSuite: "input_csvs", "*stem*") - self.check_wildcard_exists_and_not_empty(input_csvs_root, ".csv") + self.check_wildcard_exists_and_not_empty(input_csvs_root, ".nc") images_root = os.path.join(IntegrationTestUtils.TEST_OUT_PATH, IntegrationTestUtils.TEST_JOB_DIR, diff --git a/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/assets/example_env_suit_run.zip b/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/assets/example_env_suit_run.zip deleted file mode 100644 index 6f44bffff4fe87608a28131d0f60e2e555667d8b..0000000000000000000000000000000000000000 Binary files a/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/assets/example_env_suit_run.zip and /dev/null differ diff --git a/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json b/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json index 3e98671a17d37b21efa47bc0a2531b08c90a6b39..105636292c30151f5804e9520f345746764c46c3 100644 --- a/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json +++ b/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json @@ -292,7 +292,7 @@ "stem": "${depPlotPath}/infection_${SubRegionNameLower}_stem_seasonincforecast_*0300_*0000_map.png" }, "Aggregation" : { - "raster_path_template" : "${depDataPath}/${SubRegionNameLower}_${disease_name_snakecase}_masked.csv", + "raster_path_template" : "${depDataPath}/${SubRegionNameLower}_${disease_name_snakecase}_masked.nc", "raster_name_template" : "predicted_infected_area_${disease_name_camelcase}", "shape_fn_entry" : "ShapeFilenameAdmin2", "shape_coln" : "ADM2_EN",