From 8d868ce901a93aa8543a429935fbf34dc22c26e9 Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Mon, 23 Sep 2024 14:55:46 +0100
Subject: [PATCH] adding new code to compare epi fit outputs
---
.gitlab-ci.yml | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 49e0f94..53745e7 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -149,6 +149,11 @@ epi_fit:
mkdir $CI_PROJECT_DIR/fitting_outputs
cp -rv $OUTPUT_DIR/*.csv $OUTPUT_DIR/*.json $OUTPUT_DIR/parameter_sweep_heatmaps $CI_PROJECT_DIR/fitting_outputs/
+
+ python3 $PACKAGES_DIR/epimodel/ews/epi_model/epi_fit/utils.py
+ /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/optimum_parameters_metrics.csv
+ /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/example_optimum_parameters_metrics.csv
+
artifacts:
when: always
paths:
--
GitLab