From 7a91ef92707e747134fdf677cd3ef7dda3d497e2 Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Mon, 23 Sep 2024 16:05:34 +0100
Subject: [PATCH] adding new code to compare epi fit outputs
---
.gitlab-ci.yml | 12 +++++++++++-
1 file changed, 11 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 216902b..89f22c8 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -139,7 +139,17 @@ epi_fit:
export EMAIL_CRED
OUTPUT_DIR="/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/"
-
+
+ python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py
+ /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/sys_config_epi_remote.json
+ /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/run_config_epi_long_remote.json
+ $OUTPUT_DIR
+ 2016
+
+ mkdir $CI_PROJECT_DIR/fitting_outputs
+
+ cp -rv $OUTPUT_DIR/*.csv $OUTPUT_DIR/*.json $OUTPUT_DIR/parameter_sweep_heatmaps $CI_PROJECT_DIR/fitting_outputs/
+
python3 $PACKAGES_DIR/epimodel/ews/epi_model/epi_fit/params_metrics_file_compare.py
/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/optimum_parameters_metrics.csv
/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/example_optimum_parameters_metrics.csv
--
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