diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 216902bf213c39eb40a1926ff854e95f52f61f52..89f22c80097a66df4721e8cf6a60d77bb380abac 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -139,7 +139,17 @@ epi_fit: export EMAIL_CRED OUTPUT_DIR="/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/" - + + python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py + /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/sys_config_epi_remote.json + /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/run_config_epi_long_remote.json + $OUTPUT_DIR + 2016 + + mkdir $CI_PROJECT_DIR/fitting_outputs + + cp -rv $OUTPUT_DIR/*.csv $OUTPUT_DIR/*.json $OUTPUT_DIR/parameter_sweep_heatmaps $CI_PROJECT_DIR/fitting_outputs/ + python3 $PACKAGES_DIR/epimodel/ews/epi_model/epi_fit/params_metrics_file_compare.py /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/optimum_parameters_metrics.csv /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/example_optimum_parameters_metrics.csv