From 7915d12e3e515dd52ed37986efc1364a4ed94cac Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Thu, 23 Mar 2023 12:10:43 +0000
Subject: [PATCH] trying to get full-fat epi test to run on server
---
tests/integration/full/full_test_epi.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/tests/integration/full/full_test_epi.py b/tests/integration/full/full_test_epi.py
index d473612..4719867 100644
--- a/tests/integration/full/full_test_epi.py
+++ b/tests/integration/full/full_test_epi.py
@@ -19,10 +19,10 @@ class FullTestEpi(BaseEpiTestSuite.EpiTestSuite):
self.set_expected_values()
- # if BaseEpiTestSuite.EpiTestSuite.TEST_OUT_PATH is None or not os.path.isdir(BaseEpiTestSuite.EpiTestSuite.TEST_OUT_PATH):
- if True:
+ if BaseEpiTestSuite.EpiTestSuite.TEST_OUT_PATH is None or not os.path.isdir(BaseEpiTestSuite.EpiTestSuite.TEST_OUT_PATH):
+ # if True:
FullTestEpi.write_temp_run_config_files()
- # FullTestEpi.run_dependent_pipelines()
+ FullTestEpi.run_dependent_pipelines()
FullTestEpi.run_epi_pipeline()
else:
print(f"output in {BaseEpiTestSuite.EpiTestSuite.TEST_OUT_PATH} already written, skipping rerun")
--
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