From 6f22bc689791a9dfa3c747e7f3c013458dc484fb Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Fri, 30 Aug 2024 13:37:36 +0100
Subject: [PATCH] making tests work
---
.gitlab-ci.yml | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 98d22fd..1c1dcf9 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -68,7 +68,7 @@ stages:
- ls $PACKAGES_DIR
half_fat_tests:
- when: always
+ when: manual
stage: half-fat
extends: .before_script
@@ -85,7 +85,7 @@ half_fat_tests:
expire_in: 10 days
half_fat_epi_tests:
- when: always
+ when: manual
stage: half-fat
extends: .before_script
@@ -126,7 +126,7 @@ full_fat_depo:
expire_in: 10 days
epi_fit:
- when: manual
+ when: always
stage: epi-fit
extends: .before_script
tags: ["ewas-production"]
@@ -134,6 +134,8 @@ epi_fit:
- >
cd $CI_PROJECT_DIR
+ EMAIL_CRED=/storage/app/EWS_prod/envs/credentials/Cred_gmail.json
+
mkdir $CI_PROJECT_DIR/fitting_outputs
python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py
--
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