diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 98d22fdcfff991ee1b34cfd6e9f00b9908503c31..1c1dcf9ab65ff2fa1c772f7df66d0f5accce9c3d 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -68,7 +68,7 @@ stages: - ls $PACKAGES_DIR half_fat_tests: - when: always + when: manual stage: half-fat extends: .before_script @@ -85,7 +85,7 @@ half_fat_tests: expire_in: 10 days half_fat_epi_tests: - when: always + when: manual stage: half-fat extends: .before_script @@ -126,7 +126,7 @@ full_fat_depo: expire_in: 10 days epi_fit: - when: manual + when: always stage: epi-fit extends: .before_script tags: ["ewas-production"] @@ -134,6 +134,8 @@ epi_fit: - > cd $CI_PROJECT_DIR + EMAIL_CRED=/storage/app/EWS_prod/envs/credentials/Cred_gmail.json + mkdir $CI_PROJECT_DIR/fitting_outputs python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py