From 5e1f085d15f403b0e1922da6549d73b016fa4d2d Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Wed, 1 Feb 2023 15:31:10 +0000
Subject: [PATCH] adding flag for storing output after running
---
.gitlab-ci.yml | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 4a76bda..b4f0abf 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -61,6 +61,7 @@ stages:
- coordinator=$CI_PROJECT_DIR/coordinator
- coordinator_tests=$CI_PROJECT_DIR/tests
- export PYTHONPATH=$PYTHONPATH:$coordinator:$coordinator_tests
+ - echo $PYTHONPATH
- ls $PACKAGES_DIR
- source /storage/app/miniconda3/bin/activate /storage/app/EWS_prod/envs/conda/py3EWS/
@@ -133,7 +134,7 @@ half_fat_epi_tests:
full_fat_tests:
when: manual
stage: full-fat
-# extends: .half_fat_before_script
+ extends: .half_fat_before_script
image: lb584/ews_coordinator:latest
tags: ["ewas-production"]
script:
@@ -147,7 +148,7 @@ full_fat_tests:
#echo "this is a manual job"
- #cd $CI_PROJECT_DIR/tests/integration/full/
+ cd $CI_PROJECT_DIR/tests/integration/full/
#ls
--
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