From 53ff68d466610b2e7c7ba89740e0e647b6c46623 Mon Sep 17 00:00:00 2001
From: jws52 <jws52@cam.ac.uk>
Date: Tue, 7 Feb 2023 09:43:54 +0000
Subject: [PATCH] fix: Epi model bounds are now handled by EpiModel
See EpiModel commit 728921c.
---
coordinator/ProcessorEpidemiology.py | 6 ------
1 file changed, 6 deletions(-)
diff --git a/coordinator/ProcessorEpidemiology.py b/coordinator/ProcessorEpidemiology.py
index 7ce7581..3dbd1d9 100644
--- a/coordinator/ProcessorEpidemiology.py
+++ b/coordinator/ProcessorEpidemiology.py
@@ -277,18 +277,12 @@ def process_in_job_epi(jobPath,status,config,component):
config_for_lister = config.copy()
config_for_lister.update(config_epi)
- # get bounds of host map, to exclude redundant deposition datapoints
- hostRasterFileName = config_for_lister["Host"]["HostRaster"]
- with rio_open(hostRasterFileName) as hostRaster:
- bounds = hostRaster.bounds
-
lister_kwargs = {}
lister_kwargs['reference_date']=config['ReferenceTime']
loader_kwargs= {}
loader_kwargs['VariableName']= config_for_lister['Deposition'].get('VariableName')
loader_kwargs['VariableNameAlternative']= config_for_lister['Deposition'].get('VariableNameAlternative')
- loader_kwargs['bounds'] = bounds
try:
--
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