From 3c83f21cd9051dd26a97329ca033d6606cd3b14a Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Mon, 23 Sep 2024 16:01:47 +0100
Subject: [PATCH] adding new code to compare epi fit outputs
---
.gitlab-ci.yml | 12 +-----------
1 file changed, 1 insertion(+), 11 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 634c78a..216902b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -139,17 +139,7 @@ epi_fit:
export EMAIL_CRED
OUTPUT_DIR="/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/"
-
-# python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py
-# /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/sys_config_epi_remote.json
-# /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/run_config_epi_long_remote.json
-# $OUTPUT_DIR
-# 2016
-#
-# mkdir $CI_PROJECT_DIR/fitting_outputs
-#
-# cp -rv $OUTPUT_DIR/*.csv $OUTPUT_DIR/*.json $OUTPUT_DIR/parameter_sweep_heatmaps $CI_PROJECT_DIR/fitting_outputs/
-
+
python3 $PACKAGES_DIR/epimodel/ews/epi_model/epi_fit/params_metrics_file_compare.py
/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/optimum_parameters_metrics.csv
/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/example_optimum_parameters_metrics.csv
--
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