From 23720ecebfa60466c3084903d65a549342b4f983 Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Wed, 29 May 2024 14:30:02 +0100
Subject: [PATCH] removing redundant run script
---
scripts/run_Processor.sh | 91 ----------------------------------------
1 file changed, 91 deletions(-)
delete mode 100755 scripts/run_Processor.sh
diff --git a/scripts/run_Processor.sh b/scripts/run_Processor.sh
deleted file mode 100755
index 95f4ee6..0000000
--- a/scripts/run_Processor.sh
+++ /dev/null
@@ -1,91 +0,0 @@
-#REDUNDANT NOW WE CALL PROCESSOR-SPECIFIC SCRIPTS TO RUN PROCESSORS
-
-##!/bin/bash
-#
-#original_args=("$@")
-#
-#SHORT=p:h
-#OPTS=$(getopt -a --options $SHORT -- "$@")
-#echo $OPTS
-#eval set -- "$OPTS"
-#
-#while :
-#do
-# case "$1" in
-# -p )
-# component="$2"
-# shift 2
-# ;;
-# -h | --help)
-# "Runs the appropriate Processor component using the -p flag, all other args are passed through"
-# exit 2
-# ;;
-# --)
-# shift;
-# break
-# ;;
-# *)
-# echo "Unexpected option: $1"
-# ;;
-# esac
-#done
-#
-#printf "component is %s" "$component"
-#
-#if [ "$component" = "Environment" ]; then
-# processor_class="ProcessorEnvironment.py"
-#elif [ "$component" = "Deposition" ];then
-# processor_class="ProcessorDeposition.py"
-#elif [ "$component" = "Survey" ];then
-# processor_class="ProcessorSurveys.py"
-#elif [ "$component" = "Advisory" ];then
-# processor_class="ProcessorAdvisory.py"
-#elif [ "$component" = "Scraper" ];then
-# processor_class="ProcessorScraper.py"
-#elif [ "$component" = "Epidemiology" ];then
-# processor_class="ProcessorEpidemiology.py"
-#else
-# printf "component '%s' not recognised" "$component"
-#fi
-#
-#
-## directory containing all environment
-#envs=/storage/app/EWS_prod/envs
-#
-## directory containing all custom python packages
-#bin=/storage/app/EWS_prod/code/
-#
-## provide custom python packages so they can be imported
-#flagdir=${bin}/flagdir/
-#epimodel=${bin}/epimodel/
-#advisory=${bin}/advisory_builder/
-#met_processing=${bin}/met_extractor_v2/
-#met_processor=${bin}/environmental_suitability/
-#plotting=${bin}/plotting/
-#post_processing=${bin}/post_processing/
-#source_gen=${bin}/source_gen/
-#
-#export PYTHONPATH=$PYTHONPATH:$flagdir:$epimodel:$advisory:$met_processing:$met_processor:$plotting:$source_gen:$post_processing
-#
-## provide path to email credentials for logging
-#
-#export EMAIL_CRED=${envs}/credentials/Cred_gmail.json
-#
-## activate conda environment of python modules so they can be imported
-##TODO: Move conda_env from bin to envs
-#conda_env=${envs}/conda/py3EWS
-#source /storage/app/miniconda3/bin/activate ${conda_env}
-#
-## get path of this script (to point to files within the same git repo)
-#proc_path="$( dirname "$(readlink -f "$0" )" )"
-#
-## run the processor with all arguments
-#processor=${proc_path}/../coordinator/${processor_class}
-#printf "processor is %s\n\n" "$processor"
-#python "${processor}" "${original_args[@]}"
-#exit_code=$?;
-#
-## deactivate conda environment
-#source /storage/app/miniconda3/bin/deactivate ${conda_env}
-#
-#exit $exit_code;
--
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