diff --git a/scripts/run_Processor.sh b/scripts/run_Processor.sh deleted file mode 100755 index 95f4ee65d33543af69ed681bafab09ad2b6489b7..0000000000000000000000000000000000000000 --- a/scripts/run_Processor.sh +++ /dev/null @@ -1,91 +0,0 @@ -#REDUNDANT NOW WE CALL PROCESSOR-SPECIFIC SCRIPTS TO RUN PROCESSORS - -##!/bin/bash -# -#original_args=("$@") -# -#SHORT=p:h -#OPTS=$(getopt -a --options $SHORT -- "$@") -#echo $OPTS -#eval set -- "$OPTS" -# -#while : -#do -# case "$1" in -# -p ) -# component="$2" -# shift 2 -# ;; -# -h | --help) -# "Runs the appropriate Processor component using the -p flag, all other args are passed through" -# exit 2 -# ;; -# --) -# shift; -# break -# ;; -# *) -# echo "Unexpected option: $1" -# ;; -# esac -#done -# -#printf "component is %s" "$component" -# -#if [ "$component" = "Environment" ]; then -# processor_class="ProcessorEnvironment.py" -#elif [ "$component" = "Deposition" ];then -# processor_class="ProcessorDeposition.py" -#elif [ "$component" = "Survey" ];then -# processor_class="ProcessorSurveys.py" -#elif [ "$component" = "Advisory" ];then -# processor_class="ProcessorAdvisory.py" -#elif [ "$component" = "Scraper" ];then -# processor_class="ProcessorScraper.py" -#elif [ "$component" = "Epidemiology" ];then -# processor_class="ProcessorEpidemiology.py" -#else -# printf "component '%s' not recognised" "$component" -#fi -# -# -## directory containing all environment -#envs=/storage/app/EWS_prod/envs -# -## directory containing all custom python packages -#bin=/storage/app/EWS_prod/code/ -# -## provide custom python packages so they can be imported -#flagdir=${bin}/flagdir/ -#epimodel=${bin}/epimodel/ -#advisory=${bin}/advisory_builder/ -#met_processing=${bin}/met_extractor_v2/ -#met_processor=${bin}/environmental_suitability/ -#plotting=${bin}/plotting/ -#post_processing=${bin}/post_processing/ -#source_gen=${bin}/source_gen/ -# -#export PYTHONPATH=$PYTHONPATH:$flagdir:$epimodel:$advisory:$met_processing:$met_processor:$plotting:$source_gen:$post_processing -# -## provide path to email credentials for logging -# -#export EMAIL_CRED=${envs}/credentials/Cred_gmail.json -# -## activate conda environment of python modules so they can be imported -##TODO: Move conda_env from bin to envs -#conda_env=${envs}/conda/py3EWS -#source /storage/app/miniconda3/bin/activate ${conda_env} -# -## get path of this script (to point to files within the same git repo) -#proc_path="$( dirname "$(readlink -f "$0" )" )" -# -## run the processor with all arguments -#processor=${proc_path}/../coordinator/${processor_class} -#printf "processor is %s\n\n" "$processor" -#python "${processor}" "${original_args[@]}" -#exit_code=$?; -# -## deactivate conda environment -#source /storage/app/miniconda3/bin/deactivate ${conda_env} -# -#exit $exit_code;