diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index b048bbad76257e2b8da0611c0878295f8656ef69..56c3234191eeafd4fa1e2c157b096d2f9d5e96a8 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -83,7 +83,7 @@ half_fat_tests: when: manual stage: half-fat extends: .before_script - image: lb584/ews_coordinator:latest + image: lb584/ews_coordinator_pip:latest script: - cd $CI_PROJECT_DIR/tests/integration/partial/ diff --git a/configs/docker/build/requirements.txt b/configs/docker/build/requirements.txt index 4f65b81b4a3e82486e4b51423c83de5edfc41cb5..dfea1561b0500f5a83a23a94258907408961fff9 100644 --- a/configs/docker/build/requirements.txt +++ b/configs/docker/build/requirements.txt @@ -1,8 +1,8 @@ contextily==1.5.0 geopandas==0.14.1 -html-testRunner==1.2.1 -pip==23.3 python-docx==1.1.0 rioxarray==0.15.0 Rtree==1.1.0 scitools-iris==3.7.0 +html-testRunner==1.2.1 +coverage==7.4.0 \ No newline at end of file diff --git a/docs/_source/installation.rst b/docs/_source/installation.rst index 31e90b89c5ec5c5f8a97c277fe39d2390f1c8330..ec386db9d9ec067390199411eb6b384f4bc46b10 100644 --- a/docs/_source/installation.rst +++ b/docs/_source/installation.rst @@ -180,7 +180,7 @@ when attached to the running docker container: .. code-block:: bash - cd /storage/app/EWS_prod/code/coordonator/tests/integration/ + cd /storage/app/EWS_prod/code/coordinator/tests/integration/partial/ ./run_tests.sh If successful, you will see lots of system out passing by, with a message like "Ran 14 tests in 0:01:13 OK" at the end. diff --git a/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json b/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json index 55e02761a1bdd6a5b51c82063f8c7ea4bff01e53..3e98671a17d37b21efa47bc0a2531b08c90a6b39 100644 --- a/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json +++ b/tests/test_data/test_deployment/regions/EastAfrica/resources/coordinator/configs/config_EastAfrica_fc_live.json @@ -182,7 +182,7 @@ "PathTemplate" : "${WorkspacePath}ENVIRONMENT_2.0_${DateString}/processed/${RegionName}/${DiseaseName}/", "SuccessFileTemplate" : "${WorkspacePath}ENVIRONMENT_2.0_${StartString}/STATUS_SUCCESS", "FileListerFunction" : "list_onefile_operational", - "FileNameTemplate" : "RIE_value.csv", + "FileNameTemplate" : "RIE_value.nc", "FileNamePrepared" : "?" }, "Epi" : [