From 194d1f880d2cc2a33ee85dfaeaa7bfd3444f2e4b Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Mon, 23 Sep 2024 16:01:15 +0100
Subject: [PATCH] adding new code to compare epi fit outputs
---
.gitlab-ci.yml | 18 +++++++++---------
1 file changed, 9 insertions(+), 9 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 838f314..634c78a 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -140,15 +140,15 @@ epi_fit:
OUTPUT_DIR="/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/"
- python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py
- /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/sys_config_epi_remote.json
- /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/run_config_epi_long_remote.json
- $OUTPUT_DIR
- 2016
-
- mkdir $CI_PROJECT_DIR/fitting_outputs
-
- cp -rv $OUTPUT_DIR/*.csv $OUTPUT_DIR/*.json $OUTPUT_DIR/parameter_sweep_heatmaps $CI_PROJECT_DIR/fitting_outputs/
+# python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit_lb584.py
+# /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/sys_config_epi_remote.json
+# /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/run_config_epi_long_remote.json
+# $OUTPUT_DIR
+# 2016
+#
+# mkdir $CI_PROJECT_DIR/fitting_outputs
+#
+# cp -rv $OUTPUT_DIR/*.csv $OUTPUT_DIR/*.json $OUTPUT_DIR/parameter_sweep_heatmaps $CI_PROJECT_DIR/fitting_outputs/
python3 $PACKAGES_DIR/epimodel/ews/epi_model/epi_fit/params_metrics_file_compare.py
/storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/optimum_parameters_metrics.csv
--
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