From 0b53cebe3a770908ab3194342d95c50f525e69cd Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Fri, 23 Aug 2024 17:01:26 +0100
Subject: [PATCH] putting outputs of epi_fit in the projects dir to be bundled
as an asset
---
.gitlab-ci.yml | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 292c0a2..fcb1bc4 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -133,12 +133,15 @@ epi_fit:
script:
- >
cd $CI_PROJECT_DIR
-
- python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit.py /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/epi_fit_S3_H4_D1_M1_F2_Q1_short_epi.json /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/outputs/ 2016
+ mkdir $CI_PROJECT_DIR/outputs
+ python3 $PACKAGES_DIR/epimodel/ews/epi_model/fit.py
+ /storage/app/EWS_prod/regions/EastAfrica/test_workspace/integration/epi_fit/dev/data_proc/6.0_epi_pipeline/inputs/configs/epi_fit_S3_H4_D1_M1_F2_Q1_short_epi.json
+ $CI_PROJECT_DIR/outputs/
+ 2016
artifacts:
when: always
paths:
- - $CI_PROJECT_DIR/*.log
+ - $CI_PROJECT_DIR/outputs/
expire_in: 10 days
full_fat_env_suit:
--
GitLab