From 05ec687dbfea87a017d2c773b07ef3e7f327d475 Mon Sep 17 00:00:00 2001
From: lb584 <lb584@cam.ac.uk>
Date: Thu, 20 Jun 2024 16:06:34 +0100
Subject: [PATCH] adding a region folder into the resource json file tree

---
 .gitignore                                                    | 4 ++--
 .../config_EastAfrica_variety_names_tidy.json                 | 0
 .../{ => EastAfrica}/configs/coordinator/README.txt           | 0
 .../coordinator/advisory_config_EastAfrica_fc_live.json       | 0
 .../configs/coordinator/depo_config_EastAfrica_fc_live.json   | 0
 .../coordinator/env_suit_config_EastAfrica_fc_live.json       | 0
 .../configs/coordinator/epi_config_EastAfrica_fc_live.json    | 0
 .../{ => EastAfrica}/configs/coordinator/log_config.json      | 0
 .../coordinator/met_resample_config_EastAfrica_fc_live.json   | 0
 .../configs/coordinator/survey_config_EastAfrica_fc_live.json | 0
 .../configs/coordinator/template_Cred-WRT.json                | 0
 .../configs/coordinator/template_sys_config_EastAfrica.json   | 0
 .../configs/met_extractor/FIELD_NAME_CONSTANTS.csv            | 0
 .../configs/met_extractor/SYS_CONFIG_PINE.json                | 0
 .../configs/met_extractor/template_new_extract_config.json    | 0
 .../configs/met_extractor/template_operational_config.json    | 0
 .../configs/met_resample/run_config_MetResample.json          | 0
 .../configs/plotting/chart/CHART_CONFIG_EAST_AFRICA_PINE.json | 0
 .../plotting/chart/CHART_CONFIG_ETHIOPIA_EPI_PINE.json        | 0
 .../configs/plotting/chart/CHART_CONFIG_ETHIOPIA_PINE.json    | 0
 .../configs/plotting/chart/CHART_CONFIG_KENYA_PINE.json       | 0
 .../configs/plotting/chart/CHART_CONFIG_TANZANIA_EPI.json     | 0
 .../configs/plotting/chart/CHART_CONFIG_ZAMBIA_PINE.json      | 0
 .../configs/plotting/deposition/RUN_CONFIG_DEPO.json          | 0
 .../plotting/deposition/RUN_CONFIG_DEPO_NORMALIZED.json       | 0
 .../configs/plotting/env_suit/RUN_CONFIG_ENV.json             | 0
 .../{ => EastAfrica}/configs/plotting/epi/RUN_CONFIG_EPI.json | 0
 .../configs/plotting/epi/RUN_CONFIG_EPI_seasonaccum.json      | 0
 .../configs/plotting/epi/RUN_CONFIG_EPI_weekahead.json        | 0
 .../plotting/name_extraction/NAME_EXTRACTION_CONFIG.json      | 0
 .../configs/source_gen/config_EastAfrica_mapspam2017.json     | 0
 31 files changed, 2 insertions(+), 2 deletions(-)
 rename pipeline_resources/{ => EastAfrica}/configs/advisory_builder/config_EastAfrica_variety_names_tidy.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/README.txt (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/advisory_config_EastAfrica_fc_live.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/depo_config_EastAfrica_fc_live.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/env_suit_config_EastAfrica_fc_live.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/epi_config_EastAfrica_fc_live.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/log_config.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/met_resample_config_EastAfrica_fc_live.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/survey_config_EastAfrica_fc_live.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/template_Cred-WRT.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/coordinator/template_sys_config_EastAfrica.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/met_extractor/FIELD_NAME_CONSTANTS.csv (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/met_extractor/SYS_CONFIG_PINE.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/met_extractor/template_new_extract_config.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/met_extractor/template_operational_config.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/met_resample/run_config_MetResample.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/chart/CHART_CONFIG_EAST_AFRICA_PINE.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_EPI_PINE.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_PINE.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/chart/CHART_CONFIG_KENYA_PINE.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/chart/CHART_CONFIG_TANZANIA_EPI.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/chart/CHART_CONFIG_ZAMBIA_PINE.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/deposition/RUN_CONFIG_DEPO.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/deposition/RUN_CONFIG_DEPO_NORMALIZED.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/env_suit/RUN_CONFIG_ENV.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/epi/RUN_CONFIG_EPI.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/epi/RUN_CONFIG_EPI_seasonaccum.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/epi/RUN_CONFIG_EPI_weekahead.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/plotting/name_extraction/NAME_EXTRACTION_CONFIG.json (100%)
 rename pipeline_resources/{ => EastAfrica}/configs/source_gen/config_EastAfrica_mapspam2017.json (100%)

diff --git a/.gitignore b/.gitignore
index 7c55899..ead3a8f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -17,5 +17,5 @@ custom_plotting.py
 /docs/_build/
 /docs/_autosummary/
 dump.csv
-/pipeline_resources/configs/coordinator/Cred-WRT.json
-/pipeline_resources/configs/coordinator/sys_config_EastAfrica.json
+/pipeline_resources/EastAfrica/configs/coordinator/Cred-WRT.json
+/pipeline_resources/EastAfrica/configs/coordinator/sys_config_EastAfrica.json
diff --git a/pipeline_resources/configs/advisory_builder/config_EastAfrica_variety_names_tidy.json b/pipeline_resources/EastAfrica/configs/advisory_builder/config_EastAfrica_variety_names_tidy.json
similarity index 100%
rename from pipeline_resources/configs/advisory_builder/config_EastAfrica_variety_names_tidy.json
rename to pipeline_resources/EastAfrica/configs/advisory_builder/config_EastAfrica_variety_names_tidy.json
diff --git a/pipeline_resources/configs/coordinator/README.txt b/pipeline_resources/EastAfrica/configs/coordinator/README.txt
similarity index 100%
rename from pipeline_resources/configs/coordinator/README.txt
rename to pipeline_resources/EastAfrica/configs/coordinator/README.txt
diff --git a/pipeline_resources/configs/coordinator/advisory_config_EastAfrica_fc_live.json b/pipeline_resources/EastAfrica/configs/coordinator/advisory_config_EastAfrica_fc_live.json
similarity index 100%
rename from pipeline_resources/configs/coordinator/advisory_config_EastAfrica_fc_live.json
rename to pipeline_resources/EastAfrica/configs/coordinator/advisory_config_EastAfrica_fc_live.json
diff --git a/pipeline_resources/configs/coordinator/depo_config_EastAfrica_fc_live.json b/pipeline_resources/EastAfrica/configs/coordinator/depo_config_EastAfrica_fc_live.json
similarity index 100%
rename from pipeline_resources/configs/coordinator/depo_config_EastAfrica_fc_live.json
rename to pipeline_resources/EastAfrica/configs/coordinator/depo_config_EastAfrica_fc_live.json
diff --git a/pipeline_resources/configs/coordinator/env_suit_config_EastAfrica_fc_live.json b/pipeline_resources/EastAfrica/configs/coordinator/env_suit_config_EastAfrica_fc_live.json
similarity index 100%
rename from pipeline_resources/configs/coordinator/env_suit_config_EastAfrica_fc_live.json
rename to pipeline_resources/EastAfrica/configs/coordinator/env_suit_config_EastAfrica_fc_live.json
diff --git a/pipeline_resources/configs/coordinator/epi_config_EastAfrica_fc_live.json b/pipeline_resources/EastAfrica/configs/coordinator/epi_config_EastAfrica_fc_live.json
similarity index 100%
rename from pipeline_resources/configs/coordinator/epi_config_EastAfrica_fc_live.json
rename to pipeline_resources/EastAfrica/configs/coordinator/epi_config_EastAfrica_fc_live.json
diff --git a/pipeline_resources/configs/coordinator/log_config.json b/pipeline_resources/EastAfrica/configs/coordinator/log_config.json
similarity index 100%
rename from pipeline_resources/configs/coordinator/log_config.json
rename to pipeline_resources/EastAfrica/configs/coordinator/log_config.json
diff --git a/pipeline_resources/configs/coordinator/met_resample_config_EastAfrica_fc_live.json b/pipeline_resources/EastAfrica/configs/coordinator/met_resample_config_EastAfrica_fc_live.json
similarity index 100%
rename from pipeline_resources/configs/coordinator/met_resample_config_EastAfrica_fc_live.json
rename to pipeline_resources/EastAfrica/configs/coordinator/met_resample_config_EastAfrica_fc_live.json
diff --git a/pipeline_resources/configs/coordinator/survey_config_EastAfrica_fc_live.json b/pipeline_resources/EastAfrica/configs/coordinator/survey_config_EastAfrica_fc_live.json
similarity index 100%
rename from pipeline_resources/configs/coordinator/survey_config_EastAfrica_fc_live.json
rename to pipeline_resources/EastAfrica/configs/coordinator/survey_config_EastAfrica_fc_live.json
diff --git a/pipeline_resources/configs/coordinator/template_Cred-WRT.json b/pipeline_resources/EastAfrica/configs/coordinator/template_Cred-WRT.json
similarity index 100%
rename from pipeline_resources/configs/coordinator/template_Cred-WRT.json
rename to pipeline_resources/EastAfrica/configs/coordinator/template_Cred-WRT.json
diff --git a/pipeline_resources/configs/coordinator/template_sys_config_EastAfrica.json b/pipeline_resources/EastAfrica/configs/coordinator/template_sys_config_EastAfrica.json
similarity index 100%
rename from pipeline_resources/configs/coordinator/template_sys_config_EastAfrica.json
rename to pipeline_resources/EastAfrica/configs/coordinator/template_sys_config_EastAfrica.json
diff --git a/pipeline_resources/configs/met_extractor/FIELD_NAME_CONSTANTS.csv b/pipeline_resources/EastAfrica/configs/met_extractor/FIELD_NAME_CONSTANTS.csv
similarity index 100%
rename from pipeline_resources/configs/met_extractor/FIELD_NAME_CONSTANTS.csv
rename to pipeline_resources/EastAfrica/configs/met_extractor/FIELD_NAME_CONSTANTS.csv
diff --git a/pipeline_resources/configs/met_extractor/SYS_CONFIG_PINE.json b/pipeline_resources/EastAfrica/configs/met_extractor/SYS_CONFIG_PINE.json
similarity index 100%
rename from pipeline_resources/configs/met_extractor/SYS_CONFIG_PINE.json
rename to pipeline_resources/EastAfrica/configs/met_extractor/SYS_CONFIG_PINE.json
diff --git a/pipeline_resources/configs/met_extractor/template_new_extract_config.json b/pipeline_resources/EastAfrica/configs/met_extractor/template_new_extract_config.json
similarity index 100%
rename from pipeline_resources/configs/met_extractor/template_new_extract_config.json
rename to pipeline_resources/EastAfrica/configs/met_extractor/template_new_extract_config.json
diff --git a/pipeline_resources/configs/met_extractor/template_operational_config.json b/pipeline_resources/EastAfrica/configs/met_extractor/template_operational_config.json
similarity index 100%
rename from pipeline_resources/configs/met_extractor/template_operational_config.json
rename to pipeline_resources/EastAfrica/configs/met_extractor/template_operational_config.json
diff --git a/pipeline_resources/configs/met_resample/run_config_MetResample.json b/pipeline_resources/EastAfrica/configs/met_resample/run_config_MetResample.json
similarity index 100%
rename from pipeline_resources/configs/met_resample/run_config_MetResample.json
rename to pipeline_resources/EastAfrica/configs/met_resample/run_config_MetResample.json
diff --git a/pipeline_resources/configs/plotting/chart/CHART_CONFIG_EAST_AFRICA_PINE.json b/pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_EAST_AFRICA_PINE.json
similarity index 100%
rename from pipeline_resources/configs/plotting/chart/CHART_CONFIG_EAST_AFRICA_PINE.json
rename to pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_EAST_AFRICA_PINE.json
diff --git a/pipeline_resources/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_EPI_PINE.json b/pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_EPI_PINE.json
similarity index 100%
rename from pipeline_resources/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_EPI_PINE.json
rename to pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_EPI_PINE.json
diff --git a/pipeline_resources/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_PINE.json b/pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_PINE.json
similarity index 100%
rename from pipeline_resources/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_PINE.json
rename to pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_ETHIOPIA_PINE.json
diff --git a/pipeline_resources/configs/plotting/chart/CHART_CONFIG_KENYA_PINE.json b/pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_KENYA_PINE.json
similarity index 100%
rename from pipeline_resources/configs/plotting/chart/CHART_CONFIG_KENYA_PINE.json
rename to pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_KENYA_PINE.json
diff --git a/pipeline_resources/configs/plotting/chart/CHART_CONFIG_TANZANIA_EPI.json b/pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_TANZANIA_EPI.json
similarity index 100%
rename from pipeline_resources/configs/plotting/chart/CHART_CONFIG_TANZANIA_EPI.json
rename to pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_TANZANIA_EPI.json
diff --git a/pipeline_resources/configs/plotting/chart/CHART_CONFIG_ZAMBIA_PINE.json b/pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_ZAMBIA_PINE.json
similarity index 100%
rename from pipeline_resources/configs/plotting/chart/CHART_CONFIG_ZAMBIA_PINE.json
rename to pipeline_resources/EastAfrica/configs/plotting/chart/CHART_CONFIG_ZAMBIA_PINE.json
diff --git a/pipeline_resources/configs/plotting/deposition/RUN_CONFIG_DEPO.json b/pipeline_resources/EastAfrica/configs/plotting/deposition/RUN_CONFIG_DEPO.json
similarity index 100%
rename from pipeline_resources/configs/plotting/deposition/RUN_CONFIG_DEPO.json
rename to pipeline_resources/EastAfrica/configs/plotting/deposition/RUN_CONFIG_DEPO.json
diff --git a/pipeline_resources/configs/plotting/deposition/RUN_CONFIG_DEPO_NORMALIZED.json b/pipeline_resources/EastAfrica/configs/plotting/deposition/RUN_CONFIG_DEPO_NORMALIZED.json
similarity index 100%
rename from pipeline_resources/configs/plotting/deposition/RUN_CONFIG_DEPO_NORMALIZED.json
rename to pipeline_resources/EastAfrica/configs/plotting/deposition/RUN_CONFIG_DEPO_NORMALIZED.json
diff --git a/pipeline_resources/configs/plotting/env_suit/RUN_CONFIG_ENV.json b/pipeline_resources/EastAfrica/configs/plotting/env_suit/RUN_CONFIG_ENV.json
similarity index 100%
rename from pipeline_resources/configs/plotting/env_suit/RUN_CONFIG_ENV.json
rename to pipeline_resources/EastAfrica/configs/plotting/env_suit/RUN_CONFIG_ENV.json
diff --git a/pipeline_resources/configs/plotting/epi/RUN_CONFIG_EPI.json b/pipeline_resources/EastAfrica/configs/plotting/epi/RUN_CONFIG_EPI.json
similarity index 100%
rename from pipeline_resources/configs/plotting/epi/RUN_CONFIG_EPI.json
rename to pipeline_resources/EastAfrica/configs/plotting/epi/RUN_CONFIG_EPI.json
diff --git a/pipeline_resources/configs/plotting/epi/RUN_CONFIG_EPI_seasonaccum.json b/pipeline_resources/EastAfrica/configs/plotting/epi/RUN_CONFIG_EPI_seasonaccum.json
similarity index 100%
rename from pipeline_resources/configs/plotting/epi/RUN_CONFIG_EPI_seasonaccum.json
rename to pipeline_resources/EastAfrica/configs/plotting/epi/RUN_CONFIG_EPI_seasonaccum.json
diff --git a/pipeline_resources/configs/plotting/epi/RUN_CONFIG_EPI_weekahead.json b/pipeline_resources/EastAfrica/configs/plotting/epi/RUN_CONFIG_EPI_weekahead.json
similarity index 100%
rename from pipeline_resources/configs/plotting/epi/RUN_CONFIG_EPI_weekahead.json
rename to pipeline_resources/EastAfrica/configs/plotting/epi/RUN_CONFIG_EPI_weekahead.json
diff --git a/pipeline_resources/configs/plotting/name_extraction/NAME_EXTRACTION_CONFIG.json b/pipeline_resources/EastAfrica/configs/plotting/name_extraction/NAME_EXTRACTION_CONFIG.json
similarity index 100%
rename from pipeline_resources/configs/plotting/name_extraction/NAME_EXTRACTION_CONFIG.json
rename to pipeline_resources/EastAfrica/configs/plotting/name_extraction/NAME_EXTRACTION_CONFIG.json
diff --git a/pipeline_resources/configs/source_gen/config_EastAfrica_mapspam2017.json b/pipeline_resources/EastAfrica/configs/source_gen/config_EastAfrica_mapspam2017.json
similarity index 100%
rename from pipeline_resources/configs/source_gen/config_EastAfrica_mapspam2017.json
rename to pipeline_resources/EastAfrica/configs/source_gen/config_EastAfrica_mapspam2017.json
-- 
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