Explore projects

Vertex based topologies for creating realistic spatial tissue models which play nice with DifferentialEquations.jl.

Files needed to run models for Bou Daher et al (2018) 'Anisotropic growth is achieved through the additive mechanical effect of material anisotropy and elastic asymmetry' eLife

Code for simulations of individual Microtubules in 3D and constrained by a meshed description of a cell membrane.

Source for differential pressure and force sensors control and acquisition.

Script to extract the 3D orientation in 3D confocal images of filaments in single cells (TIFF, CZI format).

A python class for the automated extraction of SAM features in three dimensions from a stack of confocal microscope images.

A python tool for the automated quantification of primordia and meristem from a stack of confocal microscope images.

2D explorator

Elementary FRAP simulation build in C using GLFW

Francois's MATLAB code

HTML5 canvas to display Cytosim

Multi-arch docker image build

A project which contains guidance about using the University Photo API as well as code samples showing how to call the API from code.

We apply sequential Bayesian inference with a discriminatively specified observation model to the subsampled gradients and Hessians used by the stochastic Newton method for online optimization.

Public Docker images