Explore projects

A pipeline to further enhance quality, integrity and reusability of the NCCID clinical data

An automated quality control pipeline for chest radiographs.

Prediction of nanobody apparent melting temperatures.

An interactive evolutionary simulation demonstrating plant-like growth through genetic regulation and resource competition. Runs in the browser and terminal, allowing users to explore the impact of mutations, selection, and environmental factors on virtual plant development

Scripts and software for generating the results of Korsbo and Jönsson (2020) "It’s about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology"

Scripts related to the manuscript "Cytoskeletal organization in isolated plant cells under geometry control".

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Investigating the R1-R4 feedbacks and nuclear shuttling for the onset of cell division. This project is led by Weibing Yang and myself .

Slides and notebooks of the course "Deep generative models with TensorFlow 2"

Vertex based topologies for creating realistic spatial tissue models which play nice with DifferentialEquations.jl.