Explore projects

Project data and code for Greenwood et al., 2019, "Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana".

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Project code for Gould et al., 2018, "Coordination of robust single cell rhythms in the Arabidopsis circadian clock".

Repository for the HoloGen application developed by Peter Christopher while working at the Centre of Molecular Materials for Photonics and Electronics in Cambridge University.

HoloGen is an app used for generating 2D holograms.

Files and software connected to the publication Yang et al 2021

Files connected to the publication A Rate Equation Approach to Elucidate the Kinetics and Robustness of the TGF-β Pathway.

An interactive evolutionary simulation demonstrating plant-like growth through genetic regulation and resource competition. Runs in the browser and terminal, allowing users to explore the impact of mutations, selection, and environmental factors on virtual plant development

Graduated Interval Recall program http://ssb22.user.srcf.net/gradint

Scripts for producing the results in the paper "Cell size and growth regulation in the Arabidopsis thaliana apical stem cell niche"

MATLAB code for running the simulations for the paper "Auxin transport model for leaf venation".

Scripts to create printers for Print Deploy using supplied csv config file.

Apple JavaScript Automation based printer installer

Model files for simulations in the publication Caggiano et al (2017) "Cell type boundaries organize plant development"

Scripts and software connected to the publication Landrein et al (2018) "Nitrate modulates stem cell dynamics in Arabidopsis shoot meristems through cytokinins"

Miscellaneous scripts etc from http://ssb22.user.srcf.net

Code for simulations of individual Microtubules in 3D and constrained by a meshed description of a cell membrane.

Scripts and software connected to the publication Gruel, Deichmann, Landrein, Hitchcock and Jönsson (2018) "The interaction of transcription factors controls the spatial layout of plant aerial stem cell niches"

End User Documentation