Explore projects

Convert a raw AXIOScan dataset in CZI format to Zarr ready for stitching

Code accompanying the internship project submitted for MPhil Computational Biology, August 2022.

Source for differential pressure and force sensors control and acquisition.

A python tool for the automated quantification of primordia and meristem from a stack of confocal microscope images.

A python class for the automated extraction of SAM features in three dimensions from a stack of confocal microscope images.

Code for simulations of individual Microtubules in 3D and constrained by a meshed description of a cell membrane.

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

A general code framework for inference and modelling of plant infectious diseases

Scripts to create printers for Print Deploy using supplied csv config file.

Convert phoneme codes and lexicon formats for English speech synths, see http://ssb22.user.srcf.net/gradint/lexconvert.html

Evaluation of the quality of imputed data against the original data distribution using Wasserstein distances

A general library for using Organism with python

Segmentation tool allowing finding nuclei in 3D and cells via membranes in 2D.