From 93ee36b6c85aa9466342f2e12311af1eb61ba88e Mon Sep 17 00:00:00 2001
From: Mark Driver <mdd31@alumni.cam.ac.uk>
Date: Tue, 16 Jun 2020 17:57:42 +0100
Subject: [PATCH] update output location.
---
phasecalculator/runners/phasetransferrunner.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/phasecalculator/runners/phasetransferrunner.py b/phasecalculator/runners/phasetransferrunner.py
index 673310b..15cdbbc 100755
--- a/phasecalculator/runners/phasetransferrunner.py
+++ b/phasecalculator/runners/phasetransferrunner.py
@@ -23,6 +23,7 @@ Script for running phasetransfer calculations.
import logging
import subprocess
import pathlib
+import sys
import puresolventinformation.information as pureinf
logging.basicConfig()
@@ -165,7 +166,7 @@ def run_calculation(arg_list):
result of system call.
"""
- return subprocess.run(arg_list,capture_output=True)
+ return subprocess.run(arg_list, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
def generate_vle_calc_args(jar_path, phase_filename, output_filename, **kwargs):
--
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